Rorug03G0175300

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017297
Physical Location & Seq
Forward (+)
14849422 .. 14849736
315 bp
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UTR
Exon/CDS
Intron
Rorug03G0175300.1

Sequence Viewer

Length: 315 bp
ATGTTGAAGACCCGACTCGACCTGCCGAATTCGATCCAGCAATTCATGAGGTCCACCGCCACGAAGCTCAACCCGGAACCCGAACCCGGGTCCTCCACGCTCTGGAGCCCCAAGAACCCGCCGGCGTCTCCGACAACCTCATCGATCGTCCGACGAGATGATAAAAGCCAGCCCGCCGCCGATCGAGGAGGGGTTCAAATTGCTGATGGAGAACGTGAAGAATGTGGAGAAGCTAGCCGGAAACGGAGTGGAGGGTTGCTTGAAGCGGACGGGCTTCGAGTAAAGCACTCTGCCGGCGCCGGAGTTGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

104

Amino Acids

11.07

Weight (kDa)

8.98

Isoelectric Point (pI)

63.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017297)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03090 FvH4_6g05700 FvH4_6g22110
rosa_chinensis RchiOBHm_Chr3g0479441
rosa_laevigata RLG00000023573
rosa_multiflora Rmu_co8054592.1_g000001 Rmu_sc0003405.1_g000001 Rmu_sc0015035.1_g000004
rosa_roxburghii Rroxscaffold_6G00402270
rosa_rugosa Rorug03G0175300
rosa_samantha Rh3CG255500 Rh3DG251700
rosa_wichuraiana Rw3G020220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 102
AciI CCGC 5 cut(s) 57, 119, 174, 177, 266
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 2 cut(s) 125, 297
AfiI CCNNNNNNNGG 3 cut(s) 86, 87, 102
AgsI TTSAA 3 cut(s) 7, 197, 263
AluBI AGCT 2 cut(s) 67, 233
AluI AGCT 2 cut(s) 67, 233
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 86
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 51, 90
AsuC2I CCSGG 3 cut(s) 74, 87, 88
AsuNHI GCTAGC 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 2 cut(s) 51, 90
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 14
BccI CCATC 1 cut(s) 200
BcnI CCSGG 3 cut(s) 74, 87, 88
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 3 cut(s) 74, 87, 88
Bme18I GGWCC 2 cut(s) 51, 90
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 51, 90
BmiI GGNNCC 4 cut(s) 78, 91, 107, 298
BmrFI CCNGG 3 cut(s) 74, 87, 88
BmtI GCTAGC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 124
BpuMI CCSGG 3 cut(s) 74, 87, 88
Bsa29I ATCGAT 1 cut(s) 143
BsaHI GRCGYC 2 cut(s) 125, 297
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 87, 102
Bse118I RCCGGY 2 cut(s) 121, 293
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 86, 87, 102
BseRI GAGGAG 1 cut(s) 201
Bsh1285I CGRYCG 2 cut(s) 147, 184
BshNI GGYRCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 143
BsiEI CGRYCG 2 cut(s) 147, 184
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 6 cut(s) 74, 87, 122, 238, 294, 300
BslI CCNNNNNNNGG 3 cut(s) 86, 87, 102
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 33, 144, 181
BspACI CCGC 5 cut(s) 57, 119, 174, 177, 266
BspDI ATCGAT 1 cut(s) 143
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 78, 91, 107, 298
BspMI ACCTGC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 296
BsrFI RCCGGY 2 cut(s) 121, 293
BssAI RCCGGY 2 cut(s) 121, 293
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 3 cut(s) 33, 144, 181
BssNI GRCGYC 2 cut(s) 125, 297
BstACI GRCGYC 2 cut(s) 125, 297
BstC8I GCNNGC 5 cut(s) 123, 170, 174, 235, 295
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 3 cut(s) 36, 147, 184
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 33, 144, 181
BstMCI CGRYCG 2 cut(s) 147, 184
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 72, 85, 86
BstV2I GAAGAC 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 143
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 5 cut(s) 123, 170, 174, 235, 295
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 2 cut(s) 121, 293
Cfr13I GGNCC 2 cut(s) 51, 90
Cfr9I CCCGGG 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 1 cut(s) 114
CviAII CATG 1 cut(s) 46
CviJI RGCY 7 cut(s) 67, 108, 168, 172, 233, 237, 274
CviKI_1 RGCY 7 cut(s) 67, 108, 168, 172, 233, 237, 274
DinI GGCGCC 1 cut(s) 298
DpnI GATC 3 cut(s) 35, 146, 183
DpnII GATC 3 cut(s) 33, 144, 181
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 51, 90
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 49
FaiI YATR 1 cut(s) 47
FatI CATG 1 cut(s) 45
FauI CCCGC 2 cut(s) 126, 181
Fnu4HI GCNGC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 300
HapII CCGG 6 cut(s) 74, 87, 122, 238, 294, 300
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 2 cut(s) 125, 297
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 1 cut(s) 15
HpaII CCGG 6 cut(s) 74, 87, 122, 238, 294, 300
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 132, 152, 314
Hpy188III TCNNGA 2 cut(s) 46, 103
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 214
Hsp92I GRCGYC 2 cut(s) 125, 297
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 297
KasI GGCGCC 1 cut(s) 296
KroI GCCGGC 2 cut(s) 121, 293
KroNI GCCGGC 2 cut(s) 123, 295
Kzo9I GATC 3 cut(s) 33, 144, 181
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 9 cut(s) 35, 50, 87, 88, 100, 135, 182, 251, 307
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 214
MalI GATC 3 cut(s) 35, 146, 183
MboI GATC 3 cut(s) 33, 144, 181
MboII GAAGA 2 cut(s) 19, 230
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 3 cut(s) 28, 41, 198
Mly113I GGCGCC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 9
MmeI TCCRAC 2 cut(s) 155, 175
MnlI CCTC 6 cut(s) 42, 103, 148, 179, 182, 245
MreI CGCCGGCG 1 cut(s) 121
MroNI GCCGGC 2 cut(s) 121, 293
MspI CCGG 6 cut(s) 74, 87, 122, 238, 294, 300
MspR9I CCNGG 3 cut(s) 74, 87, 88
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 305
NaeI GCCGGC 2 cut(s) 123, 295
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 3 cut(s) 74, 87, 88
NdeII GATC 3 cut(s) 33, 144, 181
NgoMIV GCCGGC 2 cut(s) 121, 293
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 4 cut(s) 78, 91, 107, 298
PagI TCATGA 1 cut(s) 45
PctI GAATGC 1 cut(s) 308
PdiI GCCGGC 2 cut(s) 123, 295
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 178
Ple19I CGATCG 2 cut(s) 147, 184
PleI GAGTC 1 cut(s) 9
PluTI GGCGCC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
PspN4I GGNNCC 4 cut(s) 78, 91, 107, 298
PspPI GGNCC 2 cut(s) 51, 90
PspPPI RGGWCCY 1 cut(s) 90
PvuI CGATCG 2 cut(s) 147, 184
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 33, 144, 181
Sau96I GGNCC 2 cut(s) 51, 90
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 3 cut(s) 74, 87, 88
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 24, 53, 69, 140, 217, 235
SfoI GGCGCC 1 cut(s) 298
SgrAI CRCCGGYG 1 cut(s) 121
SinI GGWCC 2 cut(s) 51, 90
SmaI CCCGGG 1 cut(s) 88
Sse9I AATT 3 cut(s) 28, 41, 198
SsiI CCGC 5 cut(s) 57, 119, 174, 177, 266
SspDI GGCGCC 1 cut(s) 296
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 72, 85, 86
TaiI ACGT 1 cut(s) 217
TaqI TCGA 5 cut(s) 18, 32, 143, 184, 277
TasI AATT 3 cut(s) 28, 41, 198
TauI GCSGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 259
TspMI CCCGGG 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 51, 90
XapI RAATTY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 86
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.