Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8058166.1

Orthogroup ID

OG0004279

Physical Location & Seq

Genomic Coordinates Forward (+)

136 .. 566

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8058166.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

atgggtgccaatatgaatttcaaggggttcatgaccgatctgcaaggcgacggcggaggtcggccaccggtaaacaacagcaacaacaacgccttggcgcggcagtcgtcgatctattccctcacgtttgacgagttacagagcaccatgggaggcccaggtaaggactttgggtccatgaacatggatgagctcctgaagagtatctggacggcggaggagactcagactcagactcagactgtgctccctactggtggtgtggtgaccggtcaagatgggtttaatcagggcctgcctctgcagagacaggggtcgttgacgctgcctcggacgctgagccagaagacggtggatgaggtgtggaggaatttgtcgtccaaggaaggaaacggtggccccggtgggtcgaatgtggtgcagaggcagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

143

Amino Acids

15.28

Weight (kDa)

5.01

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249
fragaria_vesca	FvH4_2g34330 FvH4_2g34330 FvH4_2g34330 FvH4_2g34330 FvH4_2g34330
malus_domestica	MD08G1099600.v1.1 MD15G1081800.v1.1
prunus_persica	Prupe.1G434500_v2.0.a1
pyrus_communis	pycom08g08090
rosa_chinensis	RchiOBHm_Chr6g0308031
rosa_laevigata	RLG00000010674
rosa_multiflora	Rmu_co8058166.1_g000001 Rmu_ssc0000005.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160660
rosa_rugosa	Rorug06G0363200 Rorug06G0363300 Rorug06G0363300
rosa_samantha	Rh6AG472100 Rh6BG483000 Rh6CG488200 Rh6DG474400
rosa_wichuraiana	Rw6G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	100
AciI	CCGC	3 cut(s)	54, 100, 215
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	16, 370
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	99, 163, 257, 349
AgeI	ACCGGT	2 cut(s)	67, 269
AgsI	TTSAA	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	3 cut(s)	146, 195, 249
Alw26I	GTCTC	2 cut(s)	215, 301
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	4 cut(s)	62, 154, 292, 397
ApeKI	GCWGC	2 cut(s)	325, 427
ApoI	RAATTY	2 cut(s)	16, 370
AsiGI	ACCGGT	2 cut(s)	67, 269
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	4 cut(s)	155, 174, 292, 398
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	3 cut(s)	146, 195, 249
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	2 cut(s)	67, 228
BcgI	CGANNNNNNTGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	2 cut(s)	215, 301
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	3 cut(s)	101, 326, 428
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	3 cut(s)	102, 327, 429
Bme1390I	CCNGG	2 cut(s)	159, 402
Bme18I	GGWCC	1 cut(s)	174
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	4 cut(s)	155, 174, 292, 398
BmiI	GGNNCC	3 cut(s)	7, 175, 400
BmrFI	CCNGG	2 cut(s)	159, 402
BoxI	GACNNNNGTC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	402
BsaJI	CCNNGG	6 cut(s)	93, 147, 157, 329, 381, 400
BsaWI	WCCGGW	2 cut(s)	67, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 163, 257, 349
Bse118I	RCCGGY	2 cut(s)	67, 269
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	6 cut(s)	93, 147, 157, 329, 381, 400
BseGI	GGATG	2 cut(s)	193, 361
BseLI	CCNNNNNNNGG	4 cut(s)	99, 163, 257, 349
BseMII	CTCAG	4 cut(s)	239, 245, 251, 329
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	4 cut(s)	64, 156, 294, 399
BshNI	GGYRCC	1 cut(s)	5
BshTI	ACCGGT	2 cut(s)	67, 269
BsiHKAI	GWGCWC	3 cut(s)	146, 195, 249
BsiSI	CCGG	3 cut(s)	68, 270, 402
BslI	CCNNNNNNNGG	4 cut(s)	99, 163, 257, 349
BsmAI	GTCTC	2 cut(s)	215, 301
BsnI	GGCC	4 cut(s)	64, 156, 294, 399
Bsp1286I	GDGCHC	3 cut(s)	146, 195, 249
Bsp143I	GATC	2 cut(s)	37, 111
Bsp1720I	GCTNAGC	1 cut(s)	338
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	3 cut(s)	54, 100, 215
BspANI	GGCC	4 cut(s)	64, 156, 294, 399
BspCNI	CTCAG	4 cut(s)	238, 244, 250, 330
BspFNI	CGCG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	7, 175, 400
BspMAI	CTGCAG	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	5
BsrFI	RCCGGY	2 cut(s)	67, 269
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	2 cut(s)	67, 269
BssECI	CCNNGG	6 cut(s)	93, 147, 157, 329, 381, 400
BssMI	GATC	2 cut(s)	37, 111
BssT1I	CCWWGG	3 cut(s)	93, 147, 381
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	244, 352, 395
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	4 cut(s)	225, 231, 237, 338
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	193, 361
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	40, 114
BstMAI	GTCTC	2 cut(s)	215, 301
BstMBI	GATC	2 cut(s)	37, 111
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 427
BstNI	CCWGG	1 cut(s)	159
BstPAI	GACNNNNGTC	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	157, 400
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	353
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	64, 156, 294, 399
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	193, 361
Cac8I	GCNNGC	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	295
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	67, 269
Cfr13I	GGNCC	4 cut(s)	155, 174, 292, 398
CseI	GACGC	2 cut(s)	331, 343
CspAI	ACCGGT	2 cut(s)	67, 269
CviAII	CATG	4 cut(s)	31, 148, 178, 184
CviJI	RGCY	6 cut(s)	64, 156, 193, 294, 342, 399
CviKI_1	RGCY	6 cut(s)	64, 156, 193, 294, 342, 399
DdeI	CTNAG	4 cut(s)	225, 231, 237, 338
DpnI	GATC	2 cut(s)	39, 113
DpnII	GATC	2 cut(s)	37, 111
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	2 cut(s)	69, 230
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	93, 147, 381
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	3 cut(s)	93, 147, 381
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	3 cut(s)	93, 147, 381
FaeI	CATG	4 cut(s)	34, 151, 181, 187
FaiI	YATR	5 cut(s)	14, 32, 149, 179, 185
FatI	CATG	4 cut(s)	30, 147, 177, 183
Fnu4HI	GCNGC	3 cut(s)	101, 326, 428
FokI	GGATG	2 cut(s)	200, 368
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	101, 326, 428
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	101, 326, 428
HaeIII	GGCC	4 cut(s)	64, 156, 294, 399
HapII	CCGG	3 cut(s)	68, 270, 402
HgaI	GACGC	2 cut(s)	331, 343
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	34, 151, 181, 187
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	223, 229, 235
HpaII	CCGG	3 cut(s)	68, 270, 402
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	73, 321
Hpy188I	TCNGA	4 cut(s)	228, 234, 240, 333
Hpy188III	TCNNGA	4 cut(s)	31, 196, 208, 275
Hpy8I	GTNNAC	2 cut(s)	73, 321
Hpy99I	CGWCG	2 cut(s)	53, 112
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	3 cut(s)	244, 352, 395
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	43, 304, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 427
HpyF3I	CTNAG	4 cut(s)	225, 231, 237, 338
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	34, 151, 181, 187
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	37, 111
LmnI	GCTCC	2 cut(s)	198, 252
Lsp1109I	GCAGC	1 cut(s)	312
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	135, 265
MalI	GATC	2 cut(s)	39, 113
MboI	GATC	2 cut(s)	37, 111
MboII	GAAGA	2 cut(s)	211, 358
MhlI	GDGCHC	3 cut(s)	146, 195, 249
MluCI	AATT	2 cut(s)	16, 370
MlyI	GAGTC	3 cut(s)	217, 223, 229
MnlI	CCTC	9 cut(s)	50, 131, 146, 211, 309, 339, 352, 360, 417
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	3 cut(s)	68, 270, 402
MspR9I	CCNGG	2 cut(s)	159, 402
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	334, 427
NciI	CCSGG	1 cut(s)	402
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	37, 111
NlaIII	CATG	4 cut(s)	34, 151, 181, 187
NlaIV	GGNNCC	3 cut(s)	7, 175, 400
NmuCI	GTSAC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	30
PinAI	ACCGGT	2 cut(s)	67, 269
PkrI	GCNGC	3 cut(s)	102, 327, 429
PleI	GAGTC	3 cut(s)	217, 223, 229
PpsI	GAGTC	3 cut(s)	217, 223, 229
PshAI	GACNNNNGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	7, 175, 400
PspPI	GGNCC	4 cut(s)	155, 174, 292, 398
PstI	CTGCAG	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	101, 326, 428
Sau3AI	GATC	2 cut(s)	37, 111
Sau96I	GGNCC	4 cut(s)	155, 174, 292, 398
SchI	GAGTC	3 cut(s)	217, 223, 229
ScrFI	CCNGG	2 cut(s)	159, 402
SduI	GDGCHC	3 cut(s)	146, 195, 249
SetI	ASST	5 cut(s)	61, 128, 163, 195, 363
SfcI	CTRYAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	16, 370
SsiI	CCGC	3 cut(s)	54, 100, 215
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	157, 400
StyI	CCWWGG	3 cut(s)	93, 147, 381
TaaI	ACNGT	3 cut(s)	244, 352, 395
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	110, 410
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	16, 370
TauI	GCSGC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	325, 427
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	19, 29, 194
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	2 cut(s)	16, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.