Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000005.1

Orthogroup ID

OG0004279

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3480

Gene Structure 3480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000005.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

atgggtatggggccgaattcgcagcttggtagtcctggaatgaggggtgggattttggggattggtgagcagggtatgagtaatgctctggttcagagtccagtgctgcaaggaggagggatgtcaatggttggattaggaggtgggaatggtcgagtggctgcagtgtctcccgcgaatcagctgtcatcggatgggattgggaagagtaatggtactgatacctcgtcggtgtcgccaatgccatatgtgtttaacaatggttttaggggaaggaaaggcgggcctgtggagaaagttgttgagaggagacagaggaggatgatcaagaaccgagagtcagctgccagatcaagagctcgcaaacaggcttacacaatggagttggaagcagaagttgcaaagctaaaagaggagaacgaaaacttgaagaaaaaacaggatgaaatgatggaactgcagaagaatcaggatatggagattcaaaatcttcaaagaggaggcaagagacgttgcttgagacgaacgcagaccggtccgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

180

Amino Acids

19.45

Weight (kDa)

10.35

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249 AT1G45249
fragaria_vesca	FvH4_2g34330 FvH4_2g34330 FvH4_2g34330 FvH4_2g34330 FvH4_2g34330
malus_domestica	MD08G1099600.v1.1 MD15G1081800.v1.1
prunus_persica	Prupe.1G434500_v2.0.a1
pyrus_communis	pycom08g08090
rosa_chinensis	RchiOBHm_Chr6g0308031
rosa_laevigata	RLG00000010674
rosa_multiflora	Rmu_co8058166.1_g000001 Rmu_ssc0000005.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160660
rosa_rugosa	Rorug06G0363200 Rorug06G0363300 Rorug06G0363300
rosa_samantha	Rh6AG472100 Rh6BG483000 Rh6CG488200 Rh6DG474400
rosa_wichuraiana	Rw6G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	174, 282
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	1 cut(s)	217
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	430, 485, 494
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	25, 184, 344, 359, 406
AluI	AGCT	5 cut(s)	25, 184, 344, 359, 406
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	4 cut(s)	174, 304, 502, 514
AoxI	GGCC	2 cut(s)	11, 284
ApeKI	GCWGC	4 cut(s)	22, 106, 161, 344
ApoI	RAATTY	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsiGI	ACCGGT	1 cut(s)	533
AspS9I	GGNCC	3 cut(s)	11, 284, 536
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	34, 93, 148, 331
BccI	CCATC	2 cut(s)	188, 445
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	4 cut(s)	174, 304, 502, 514
BfmI	CTRYAG	2 cut(s)	162, 458
BisI	GCNGC	4 cut(s)	23, 107, 162, 345
BlsI	GCNGC	4 cut(s)	24, 108, 163, 346
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	11, 284, 536
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpuEI	CTTGAG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	533
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	4 cut(s)	126, 199, 327, 448
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	5 cut(s)	129, 322, 331, 428, 513
BseXI	GCAGC	4 cut(s)	34, 93, 148, 331
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	13, 286
BshTI	ACCGGT	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	534
BsmAI	GTCTC	4 cut(s)	174, 304, 502, 514
BsmBI	CGTCTC	2 cut(s)	502, 514
BsnI	GGCC	2 cut(s)	13, 286
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	324, 350
BspACI	CCGC	2 cut(s)	174, 282
BspANI	GGCC	2 cut(s)	13, 286
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	2 cut(s)	166, 462
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	533
BssMI	GATC	2 cut(s)	324, 350
Bst2UI	CCWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	284, 361
BstF5I	GGATG	4 cut(s)	126, 199, 327, 448
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	327, 353
BstMAI	GTCTC	4 cut(s)	174, 304, 502, 514
BstMBI	GATC	2 cut(s)	324, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 398
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	2 cut(s)	162, 458
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	34, 93, 148, 331
BsuRI	GGCC	2 cut(s)	13, 286
BtsCI	GGATG	4 cut(s)	126, 199, 327, 448
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	108, 171
Cac8I	GCNNGC	2 cut(s)	284, 361
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	11, 284, 536
CpoI	CGGWCCG	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	216
CspAI	ACCGGT	1 cut(s)	533
CspI	CGGWCCG	1 cut(s)	536
CviJI	RGCY	9 cut(s)	13, 25, 161, 184, 286, 344, 359, 371, 406
CviKI_1	RGCY	9 cut(s)	13, 25, 161, 184, 286, 344, 359, 371, 406
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	2 cut(s)	326, 352
DpnII	GATC	2 cut(s)	324, 350
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	361
Esp3I	CGTCTC	2 cut(s)	502, 514
FaiI	YATR	5 cut(s)	8, 77, 247, 249, 476
FauI	CCCGC	2 cut(s)	181, 275
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	23, 107, 162, 345
FokI	GGATG	4 cut(s)	133, 206, 334, 455
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	4 cut(s)	23, 107, 162, 345
GluI	GCNGC	4 cut(s)	23, 107, 162, 345
HaeIII	GGCC	2 cut(s)	13, 286
HapII	CCGG	1 cut(s)	534
HinfI	GANTC	5 cut(s)	97, 178, 338, 466, 481
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	96, 193
Hpy188III	TCNNGA	3 cut(s)	328, 354, 470
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	4 cut(s)	109, 164, 401, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 398
HpySE526I	ACGT	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	324, 350
Lsp1109I	GCAGC	4 cut(s)	34, 93, 148, 331
MaeII	ACGT	1 cut(s)	511
MalI	GATC	2 cut(s)	326, 352
MboI	GATC	2 cut(s)	324, 350
MboII	GAAGA	4 cut(s)	217, 442, 475, 482
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	106, 347
MmeI	TCCRAC	2 cut(s)	112, 366
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	184, 344
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	19, 398
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	324, 350
NlaIV	GGNNCC	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	178, 466, 481
PfoI	TCCNGGA	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	24, 108, 163, 346
PleI	GAGTC	2 cut(s)	105, 346
PpsI	GAGTC	2 cut(s)	105, 346
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	11, 284, 536
PstI	CTGCAG	2 cut(s)	166, 462
PvuII	CAGCTG	2 cut(s)	184, 344
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
Rsr2I	CGGWCCG	1 cut(s)	536
RsrII	CGGWCCG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	23, 107, 162, 345
Sau3AI	GATC	2 cut(s)	324, 350
Sau96I	GGNCC	3 cut(s)	11, 284, 536
SchI	GAGTC	2 cut(s)	106, 347
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	8 cut(s)	27, 145, 186, 227, 346, 361, 408, 514
SfcI	CTRYAG	2 cut(s)	162, 458
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	2 cut(s)	174, 282
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	16
TfiI	GAWTC	3 cut(s)	178, 466, 481
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	108, 171
TseI	GCWGC	4 cut(s)	22, 106, 161, 344
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	108, 171
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.