Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8108702.1

Orthogroup ID

OG0019920

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 608

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8108702.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 310 bp

gcttcacagaagaaatatggtctcatgaccagttttgcactttcgtttctacgatgaagcagctggatgagctgagagatatgattcacttgatgattcttgatagctatggtttggaaaaatcatcaaatttgatcatggtgtctaagacgctgctacggttacagaagtacacggcacctccttcaggggagtacgcgatggctgccccggctcacactgacaagaattttagcacaatccttttcgatgatcaagtttcaggtcttgaagttcaaaccaaggacgaacaatgggtcaagttgcctat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

4.84

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019920)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418431
rosa_multiflora	Rmu_co8108702.1_g000001 Rmu_sc0001266.1_g000007
rosa_roxburghii	Rroxscaffold_5G00361660
rosa_rugosa	Rorug04G0153000
rosa_samantha	Rh4BG216000 Rh5CG319300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AccII	CGCG	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	129, 228
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	172, 196
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	271, 277
AluBI	AGCT	3 cut(s)	63, 72, 107
AluI	AGCT	3 cut(s)	63, 72, 107
Alw26I	GTCTC	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	60, 153, 205
ApoI	RAATTY	2 cut(s)	129, 228
ArsI	GACNNNNNNTTYG	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	72, 140, 192
BccI	CCATC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	191
BclI	TGATCA	2 cut(s)	134, 252
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	61, 154, 206
BlsI	GCNGC	3 cut(s)	62, 155, 207
Bme1390I	CCNGG	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	209, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	209, 281
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	72, 140, 192
Bsh1236I	CGCG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	134, 252
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	209, 281
BssMI	GATC	2 cut(s)	134, 252
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	73, 146
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	137, 255
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	134, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 205, 211
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	72, 140, 192
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	24
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	171, 195
CviAII	CATG	2 cut(s)	25, 138
CviJI	RGCY	5 cut(s)	63, 72, 107, 205, 214
CviKI_1	RGCY	5 cut(s)	63, 72, 107, 205, 214
CviQI	GTAC	2 cut(s)	171, 195
DdeI	CTNAG	2 cut(s)	73, 146
DpnI	GATC	2 cut(s)	136, 254
DpnII	GATC	2 cut(s)	134, 252
Eco130I	CCWWGG	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	28, 141
FaiI	YATR	5 cut(s)	18, 26, 82, 110, 139
FatI	CATG	2 cut(s)	24, 137
FbaI	TGATCA	2 cut(s)	134, 252
Fnu4HI	GCNGC	3 cut(s)	61, 154, 206
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	61, 154, 206
GluI	GCNGC	3 cut(s)	61, 154, 206
HapII	CCGG	1 cut(s)	211
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	28, 141
HinfI	GANTC	2 cut(s)	84, 96
HpaII	CCGG	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188III	TCNNGA	3 cut(s)	25, 100, 268
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 205, 211
HpyF3I	CTNAG	2 cut(s)	73, 146
Hsp92II	CATG	2 cut(s)	28, 141
Ksp22I	TGATCA	2 cut(s)	134, 252
Kzo9I	GATC	2 cut(s)	134, 252
LpnPI	CCDG	5 cut(s)	43, 49, 173, 224, 248
Lsp1109I	GCAGC	3 cut(s)	72, 140, 192
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	136, 254
MboI	GATC	2 cut(s)	134, 252
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	2 cut(s)	129, 228
MnlI	CCTC	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	69, 205, 211
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	2 cut(s)	134, 252
NlaIII	CATG	2 cut(s)	28, 141
NlaIV	GGNNCC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	84, 96
PkrI	GCNGC	3 cut(s)	62, 155, 207
PspN4I	GGNNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	2 cut(s)	172, 196
RsaNI	GTAC	2 cut(s)	171, 195
SatI	GCNGC	3 cut(s)	61, 154, 206
Sau3AI	GATC	2 cut(s)	134, 252
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	5 cut(s)	65, 74, 109, 183, 267
Sse9I	AATT	2 cut(s)	129, 228
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	129, 228
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	84, 96
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	3 cut(s)	60, 153, 205
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	129, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.