Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019920

Physical Location & Seq

Genomic Coordinates Reverse (-)

42363880 .. 42371008

Gene Structure 7129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCTAGCGTTTTATAGTAAACATCATAAGATACCTCCGCAGTTGAGAGCCGAAACCTTCACTGTGTCAAGGCAACTTTTCACCCTTCCACTTGAGACAAAGAAGAAGAACCTTATCCAAAACCTTACCAGGATTACATTGGACCAAATGCCAAGGTCCCTCTGTATGAGAGTTTTGGCCTTGAGGAAGCCTCCAACTATAGATGAATCCCTTAAAAACTTGATAGAAGAAATGTGGCCTAACGGTCATGACCAGTTTTGCACTGTAATTTCTATGCTGAAGCAACTGGAGCAACTGGAGGATATGATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

104

Amino Acids

12.25

Weight (kDa)

9.06

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	4 - 37	8.1e-06	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019920)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418431
rosa_multiflora	Rmu_co8108702.1_g000001 Rmu_sc0001266.1_g000007
rosa_roxburghii	Rroxscaffold_5G00361660
rosa_rugosa	Rorug04G0153000
rosa_samantha	Rh4BG216000 Rh5CG319300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	177, 236
AspS9I	GGNCC	2 cut(s)	142, 156
AsuHPI	GGTGA	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	142, 156
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	5, 313
BfmI	CTRYAG	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	142, 156
BmgT120I	GGNCC	2 cut(s)	142, 156
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	130
BmtI	GCTAGC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	113, 202
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	3 cut(s)	253, 291, 300
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	152
BseNI	ACTGG	3 cut(s)	253, 291, 300
BshFI	GGCC	2 cut(s)	179, 238
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	179, 238
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	179, 238
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	253, 291, 300
BssECI	CCNNGG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	3 cut(s)	64, 245, 265
BstC8I	GCNNGC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	179, 238
BtsIMutI	CAGTG	2 cut(s)	60, 261
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	142, 156
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	50, 179, 190, 238
CviKI_1	RGCY	4 cut(s)	50, 179, 190, 238
Eco130I	CCWWGG	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	142, 156
Eco57I	CTGAAG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	251
FaiI	YATR	7 cut(s)	15, 27, 167, 200, 249, 275, 305
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	247
FspBI	CTAG	2 cut(s)	5, 313
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	179, 238
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	67, 95
HpyCH4III	ACNGT	3 cut(s)	64, 245, 265
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
Hsp92II	CATG	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	5 cut(s)	115, 142, 266, 272, 281
MaeI	CTAG	2 cut(s)	5, 313
MboII	GAAGA	3 cut(s)	115, 118, 239
MluCI	AATT	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	45, 170, 177, 201, 292
MseI	TTAA	2 cut(s)	213, 309
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	289
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	142, 156
PspPPI	RGGWCCY	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	213, 309
Sau96I	GGNCC	2 cut(s)	142, 156
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	5 cut(s)	37, 59, 114, 126, 158
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	142, 156
SmlI	CTYRAG	2 cut(s)	92, 181
SmoI	CTYRAG	2 cut(s)	92, 181
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	5, 313
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	64, 245, 265
TasI	AATT	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	213, 309
Tru9I	TTAA	2 cut(s)	213, 309
TscAI	CASTG	2 cut(s)	67, 268
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	67, 268
VpaK11BI	GGWCC	2 cut(s)	142, 156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	5, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.