Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019920

Physical Location & Seq

Genomic Coordinates Forward (+)

37585799 .. 37586404

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCAAGGTCCCTCATGTATGAGAGTTTTGGCCTTGAGGAAGCCTCCAACTATGAATCCCTTAAAAACTTGATAGAAGAAATGTGGCCTAACGGTCATGACCAGTTTTGCACTGTAATTTCTATGCTGAAGCAACTGGAGGAACTGAAGGATATGATTAACTTGAAGATTCTTGATAGTTATGGTATGGAGGATAAATCAAACTCGATCCTGGAGTCTAAGACACTACTACGACCAATGAAATACATGCCACCTCCTTCGAAGGATTACACGACAGGGCTCACAGCTCACACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

99

Amino Acids

11.47

Weight (kDa)

4.87

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019920)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418431
rosa_multiflora	Rmu_co8108702.1_g000001 Rmu_sc0001266.1_g000007
rosa_roxburghii	Rroxscaffold_5G00361660
rosa_rugosa	Rorug04G0153000
rosa_samantha	Rh4BG216000 Rh5CG319300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	149, 167
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	2 cut(s)	31, 86
AspS9I	GGNCC	1 cut(s)	9
AsuII	TTCGAA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	2 cut(s)	158, 233
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	103, 141
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	103, 141
BshFI	GGCC	2 cut(s)	33, 88
BsnI	GGCC	2 cut(s)	33, 88
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	33, 88
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	103, 141
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	95, 115
BstBI	TTCGAA	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	33, 88
BtsIMutI	CAGTG	2 cut(s)	111, 291
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	9
CviAII	CATG	3 cut(s)	16, 98, 247
CviJI	RGCY	5 cut(s)	33, 44, 88, 280, 287
CviKI_1	RGCY	5 cut(s)	33, 44, 88, 280, 287
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	149, 167
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	3 cut(s)	19, 101, 250
FaiI	YATR	9 cut(s)	17, 21, 54, 99, 125, 155, 183, 188, 248
FatI	CATG	3 cut(s)	15, 97, 246
FriOI	GRGCYC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	158, 233
HaeIII	GGCC	2 cut(s)	33, 88
Hin1II	CATG	3 cut(s)	19, 101, 250
HinfI	GANTC	3 cut(s)	56, 169, 215
Hpy188III	TCNNGA	2 cut(s)	98, 173
HpyAV	CCTTC	3 cut(s)	142, 256, 267
HpyCH4III	ACNGT	2 cut(s)	95, 115
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	19, 101, 250
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	5 cut(s)	116, 122, 197, 224, 261
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	2 cut(s)	89, 178
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	23, 31, 55, 133, 184, 264
MseI	TTAA	2 cut(s)	63, 159
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	3 cut(s)	19, 101, 250
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	260
PagI	TCATGA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	56, 169
PfoI	TCCNGGA	1 cut(s)	210
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	9
PspPPI	RGGWCCY	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	63, 159
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	3 cut(s)	11, 256, 289
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	95, 115
TaqI	TCGA	2 cut(s)	206, 260
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	56, 169
Tru1I	TTAA	2 cut(s)	63, 159
Tru9I	TTAA	2 cut(s)	63, 159
TscAI	CASTG	2 cut(s)	118, 298
TspDTI	ATGAA	2 cut(s)	69, 254
TspRI	CASTG	2 cut(s)	118, 298
VpaK11BI	GGWCC	1 cut(s)	9
XceI	RCATGY	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.