Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019920

Physical Location & Seq

Genomic Coordinates Reverse (-)

35426548 .. 35426862

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTAGATAGCTATGGTTTGGAAGAGACATCAAATTTGATCATGGTGTCTAAGACACTGCTACGGTTACAGAAGTACACAGCACCTCCTTCAAGGGAGTACACCATGGGATCCCCGGCTCACACTGACAAGAATTTTGGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCTTTCGTCTTTGTAGTTGGAGACTCCCTCATGGTACAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

4.81

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	36 - 102	1.7e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019920)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418431
rosa_multiflora	Rmu_co8108702.1_g000001 Rmu_sc0001266.1_g000007
rosa_roxburghii	Rroxscaffold_5G00361660
rosa_rugosa	Rorug04G0153000
rosa_samantha	Rh4BG216000 Rh5CG319300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	150, 163
AcsI	RAATTY	2 cut(s)	79, 178
AfaI	GTAC	3 cut(s)	122, 146, 306
AgsI	TTSAA	3 cut(s)	138, 221, 227
AluBI	AGCT	3 cut(s)	13, 22, 57
AluI	AGCT	3 cut(s)	13, 22, 57
Alw26I	GTCTC	2 cut(s)	65, 285
AlwI	GGATC	2 cut(s)	150, 163
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	79, 178
ArsI	GACNNNNNNTTYG	4 cut(s)	64, 96, 164, 196
AsuC2I	CCSGG	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	22
BclI	TGATCA	2 cut(s)	84, 202
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	65, 285
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	150, 159, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
BseDI	CCNNGG	3 cut(s)	150, 159, 231
BseGI	GGATG	2 cut(s)	22, 241
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	65, 285
Bsp143I	GATC	3 cut(s)	84, 155, 202
Bsp19I	CCATGG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	150, 163
BssECI	CCNNGG	3 cut(s)	150, 159, 231
BssMI	GATC	3 cut(s)	84, 155, 202
BssT1I	CCWWGG	2 cut(s)	150, 231
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	22, 241
BstKTI	GATC	3 cut(s)	87, 158, 205
BstMAI	GTCTC	2 cut(s)	65, 285
BstMBI	GATC	3 cut(s)	84, 155, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	22, 241
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 168
Csp6I	GTAC	3 cut(s)	121, 145, 305
CviAII	CATG	3 cut(s)	88, 151, 301
CviJI	RGCY	4 cut(s)	13, 22, 57, 164
CviKI_1	RGCY	4 cut(s)	13, 22, 57, 164
CviQI	GTAC	3 cut(s)	121, 145, 305
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	86, 157, 204
DpnII	GATC	3 cut(s)	84, 155, 202
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	150, 231
EcoT14I	CCWWGG	2 cut(s)	150, 231
ErhI	CCWWGG	2 cut(s)	150, 231
FaeI	CATG	3 cut(s)	91, 154, 304
FaiI	YATR	6 cut(s)	32, 60, 89, 152, 260, 302
FatI	CATG	3 cut(s)	87, 150, 300
FbaI	TGATCA	2 cut(s)	84, 202
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	29, 248
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	91, 154, 304
HinfI	GANTC	2 cut(s)	46, 293
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	123, 147
Hpy188III	TCNNGA	2 cut(s)	50, 218
Hpy8I	GTNNAC	2 cut(s)	123, 147
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	91, 154, 304
Ksp22I	TGATCA	2 cut(s)	84, 202
Kzo9I	GATC	3 cut(s)	84, 155, 202
LpnPI	CCDG	2 cut(s)	174, 198
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	3 cut(s)	86, 157, 204
MboI	GATC	3 cut(s)	84, 155, 202
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	3 cut(s)	79, 178, 310
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	141, 276, 308
MseI	TTAA	2 cut(s)	36, 313
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	84, 155, 202
NlaIII	CATG	3 cut(s)	91, 154, 304
NlaIV	GGNNCC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	122, 146, 306
RsaNI	GTAC	3 cut(s)	121, 145, 305
SaqAI	TTAA	2 cut(s)	36, 313
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	3 cut(s)	84, 155, 202
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	5 cut(s)	15, 24, 59, 133, 217
Sse9I	AATT	3 cut(s)	79, 178, 310
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	150, 231
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	79, 178, 310
TatI	WGTACW	2 cut(s)	120, 144
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	36, 313
Tru9I	TTAA	2 cut(s)	36, 313
TscAI	CASTG	2 cut(s)	108, 175
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	20, 252
TspRI	CASTG	2 cut(s)	108, 175
XapI	RAATTY	2 cut(s)	79, 178
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.