Rmu_co8142420.1_g000001

Plasminogen activator inhibitor 1 RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8142420.1
OG0018554
Physical Location & Seq
Reverse (-)
1 .. 480
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8142420.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
atggcaaccgcgaaccctttcgatctgttgggcgatgacgacaacgatgacgtaagtcaactcgctgctaaggtggtggctcctgccgccgccgccgcccagcccaagaagggtgccccggcccaagctgttcagccttcgaagtccgccaagctcccctccaagcctctacctcctgcacaagctgaggagtatttgtcaatgcgagctgtttgttctgtagtccctgggattgaatccataaaccctcttgatattagtcgcatctgtattcttattagtgcagaacaaatgcttctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HABP4_PAI-RBP1 Stm1_N

Protein Analysis

100

Amino Acids

10.35

Weight (kDa)

4.65

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018554)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0327461
rosa_multiflora Rmu_co8142420.1_g000001 Rmu_sc0005767.1_g000003
rosa_roxburghii Rroxscaffold_3G00240360
rosa_rugosa Rorug07G0349900
rosa_samantha Rh3CG267900 Rh4AG009400 Rh4CG209600 Rh5AG322800 Rh5DG558800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccII CGCG 1 cut(s) 11
AciI CCGC 6 cut(s) 9, 87, 90, 93, 96, 147
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 4 cut(s) 128, 154, 185, 209
AluI AGCT 4 cut(s) 128, 154, 185, 209
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 5 cut(s) 66, 87, 90, 93, 96
BlsI GCNGC 5 cut(s) 67, 88, 91, 94, 97
Bme1390I CCNGG 2 cut(s) 119, 228
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 81, 115
BmrFI CCNGG 2 cut(s) 119, 228
BmsI GCATC 1 cut(s) 273
BoxI GACNNNNGTC 1 cut(s) 54
Bpu10I CCTNAGC 2 cut(s) 69, 186
Bpu14I TTCGAA 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 117, 226, 227
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 117, 226, 227
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 6 cut(s) 9, 87, 90, 93, 96, 147
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 81, 115
BspT104I TTCGAA 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 117, 226, 227
BssMI GATC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 69, 186
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 86, 92, 95
BstNI CCWGG 1 cut(s) 228
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 2 cut(s) 117, 226
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 121
CviJI RGCY 9 cut(s) 80, 103, 122, 128, 136, 154, 166, 185, 209
CviKI_1 RGCY 9 cut(s) 80, 103, 122, 128, 136, 154, 166, 185, 209
DdeI CTNAG 2 cut(s) 69, 186
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 226
FaiI YATR 1 cut(s) 242
FaqI GGGAC 1 cut(s) 209
Fnu4HI GCNGC 5 cut(s) 66, 87, 90, 93, 96
Fsp4HI GCNGC 5 cut(s) 66, 87, 90, 93, 96
GluI GCNGC 5 cut(s) 66, 87, 90, 93, 96
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 103, 147
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 179, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 92, 95
HpyF3I CTNAG 2 cut(s) 69, 186
HpySE526I ACGT 1 cut(s) 51
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 85, 159
LpnPI CCDG 6 cut(s) 96, 113, 132, 189, 213, 240
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 273
MaeII ACGT 1 cut(s) 51
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 118
MnlI CCTC 5 cut(s) 169, 177, 181, 183, 258
MroXI GAANNNNTTC 1 cut(s) 17
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 119, 228
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 86, 92, 95
NciI CCSGG 1 cut(s) 119
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 81, 115
NspV TTCGAA 1 cut(s) 140
PasI CCCWGGG 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 5 cut(s) 67, 88, 91, 94, 97
PshAI GACNNNNGTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 81, 115
PspPI GGNCC 1 cut(s) 121
SatI GCNGC 5 cut(s) 66, 87, 90, 93, 96
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 119, 228
SduI GDGCHC 1 cut(s) 118
SetI ASST 7 cut(s) 54, 75, 130, 156, 175, 187, 211
SfaNI GCATC 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 140
SsiI CCGC 6 cut(s) 9, 87, 90, 93, 96, 147
StyD4I CCNGG 2 cut(s) 117, 226
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 21, 140
TauI GCSGC 4 cut(s) 89, 92, 95, 98
TfiI GAWTC 1 cut(s) 236
TseI GCWGC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.