Rh4AG009400

Plasminogen activator inhibitor 1 RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018554
Physical Location & Seq
Forward (+)
1611077 .. 1612875
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG009400.1

Sequence Viewer

Length: 291 bp
ATGTTTATACTCGCTCCTTTGAGTATGAGTTTTGGGATCGGCAACCTAGACGGAGAAGCAAACGCAAACCCTTTCGATCTGTTAGGCGATGACGATAACGATGACTTAAGTCAGCAACTTGCTGCTATGGTGGTGGTTCCTGCTGCCGCCCAGCCCAAGCCGTTTTCAACATGGGAGACTCAGTGCAAGAGTGAACTTACAAATGAGCCACATATGTCTCATGGCATTGTCAATGTTGATTACAAGGTTGCAAGTTACAAGGGCCAAGGAAGGATTGCAGAAGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HABP4_PAI-RBP1 Stm1_N

Protein Analysis

96

Amino Acids

10.31

Weight (kDa)

4.29

Isoelectric Point (pI)

27.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stm1_N PF09598 20 - 53 4e-08 Stm1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018554)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0327461
rosa_multiflora Rmu_co8142420.1_g000001 Rmu_sc0005767.1_g000003
rosa_roxburghii Rroxscaffold_3G00240360
rosa_rugosa Rorug07G0349900
rosa_samantha Rh3CG267900 Rh4AG009400 Rh4CG209600 Rh5AG322800 Rh5DG558800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AclWI GGATC 1 cut(s) 44
AflII CTTAAG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 170, 222
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 122, 143
AspS9I GGNCC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 109, 130
BceAI ACGGC 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 170, 222
BfaI CTAG 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 106
BisI GCNGC 3 cut(s) 123, 144, 147
BlsI GCNGC 3 cut(s) 124, 145, 148
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 138
BoxI GACNNNNGTC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
BseDI CCNNGG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 109, 130
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 170, 222
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 36, 76
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 36, 76
BssT1I CCWWGG 1 cut(s) 265
BstAFI CTTAAG 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 180
BstKTI GATC 2 cut(s) 39, 79
BstMAI GTCTC 2 cut(s) 170, 222
BstMBI GATC 2 cut(s) 36, 76
BstPAI GACNNNNGTC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 109, 130
BsuRI GGCC 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 2 cut(s) 171, 221
CviJI RGCY 4 cut(s) 154, 160, 208, 264
CviKI_1 RGCY 4 cut(s) 154, 160, 208, 264
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 38, 78
DpnII GATC 2 cut(s) 36, 76
Eco130I CCWWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 174, 224
FaiI YATR 7 cut(s) 8, 26, 128, 172, 213, 215, 222
FatI CATG 2 cut(s) 170, 220
FauNDI CATATG 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 123, 144, 147
Fsp4HI GCNGC 3 cut(s) 123, 144, 147
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 123, 144, 147
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 264
Hin1II CATG 2 cut(s) 174, 224
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 264, 275
HpyCH4V TGCA 3 cut(s) 186, 251, 278
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 174, 224
Kzo9I GATC 2 cut(s) 36, 76
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 153, 164
Lsp1109I GCAGC 2 cut(s) 109, 130
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 38, 78
MboI GATC 2 cut(s) 36, 76
MlyI GAGTC 1 cut(s) 172
MseI TTAA 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 106
NdeI CATATG 1 cut(s) 213
NdeII GATC 2 cut(s) 36, 76
NlaIII CATG 2 cut(s) 174, 224
NlaIV GGNNCC 1 cut(s) 138
PkrI GCNGC 3 cut(s) 124, 145, 148
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PshAI GACNNNNGTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 3 cut(s) 123, 144, 147
Sau3AI GATC 2 cut(s) 36, 76
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 172
SetI ASST 2 cut(s) 48, 249
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 265
TaqI TCGA 1 cut(s) 75
TauI GCSGC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 188
TseI GCWGC 2 cut(s) 122, 143
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 106
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.