Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Reverse (-)

38699985 .. 38703192

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCCTCCAATTCTCGCCCCTACATCTATGGAGCTTCGCTACAGAGACCAAGGTAAACACGGTAACAAACTAAAATTGGATGATAGAACACGGCTCTTTCTATACCAACTGGTTGGTACTTGGGGTCAACTTCTCTTTCCGAAACCTTGGAAAGAGTTCAGGTTGTGGTACGACAAAAACAAGGCAAAAGGCATTAAGCCATATCTCGATGGCATGGTGACTACTGGGTGGTATAAAAAGATCGGAGAGAAGATATGGACACCTTGGTTTATTAAATTCATTCACACTCGTGGCTATTTCAATATCTACACCAACTTTTTACATGAGAGAGCGCTTAGCGTCTCTCACAGAGATGCTGGTGTTAATTATGGGAAAACAGCTGGGCCTGATTCACATATATTGGATGAAAGTTCTCTTGAATTTAAGTTCTGGGATATGCAACCGTTGGGTGATCTCAAGTGGTATGATTTTTGTTTCAGAGAAATATTTCCTGAAAGAGTAATTGCGAGCCTTGAAGAACTTGGGTCTGTTCTTAATTCTGTGCAGAAACACAACAATGTTATTTTTGTCAGCCTGTTTGGGGTTAAAGAGATGGTAATAAGCAACTTGCTCTGCCACTTTGAGAGTCTAAATTTGCGGAACTATATACTTGTTGGCCCCGAGTCTGAATTCCTGTTTGATCTGGCAAGAAGAGGACATTCAGTGATCATTACGAACCGGTTTCTGGAGAGTGTAGGAGCTTATAAATTGCTTACTGTGCACAATTCTTATGTGCAAGTGATCAGTGAAATATTAGTGAAAGTCTATGTATTACAAAAGTGTTTAGAATCTAGGTACAGTTCCTGGGTGGTGGATGGGAACATGCTTCCAGTCAGCATTGACCCATTTGTCGTCGAGTCTGATCCCTCATATGATTTCTATATTGGTACGAGCTCAGAACTTTTCTTTGCCAGAGGGTCATCTTTTGCTGAAAAAGATGTTTGGGGTACTGATTTCATATCAAAATTTGCAATGATGGTGAACTCTCTGCTTGTTAGGCAACAGAGCATAAGTTTTGGGTATGTAATGGCCAAGTTCTTGGAACTGAAGAAGGGTGTGAGAGTGAACACTCTCGATGAGACAAGCTTTGGTCTTAGGATTGATAACAGTAATGTTAATCAATCTTTAGGTGATGGAAAGAAGATAGTATTTTGGCCTAATGATATGGCTTCAGATATTGTTCAGAAGCGGCTTCAAGAAATCGGTATTTGGGTTATAAATGATGACTCTTCTTGTAAGGCTGTTGTTTGCCACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

432

Amino Acids

49.89

Weight (kDa)

8.38

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	744, 1256
AasI	GACNNNNNNGTC	1 cut(s)	887
AciI	CCGC	2 cut(s)	637, 1228
AclWI	GGATC	1 cut(s)	896
AcoI	YGGCCR	1 cut(s)	1068
AcsI	RAATTY	5 cut(s)	275, 419, 631, 668, 1004
AcuI	CTGAAG	2 cut(s)	1106, 1194
AfaI	GTAC	5 cut(s)	118, 170, 836, 928, 988
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	580, 724
AgeI	ACCGGT	2 cut(s)	717, 1293
AgsI	TTSAA	4 cut(s)	301, 419, 515, 1235
AjnI	CCWGG	1 cut(s)	842
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	5 cut(s)	34, 380, 740, 933, 1125
AluI	AGCT	5 cut(s)	34, 380, 740, 933, 1125
Alw21I	GWGCWC	2 cut(s)	762, 935
Alw26I	GTCTC	3 cut(s)	39, 346, 1112
Alw44I	GTGCAC	1 cut(s)	758
AlwI	GGATC	1 cut(s)	896
AlwNI	CAGNNNCTG	1 cut(s)	843
Ama87I	CYCGRG	1 cut(s)	659
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	4 cut(s)	383, 655, 1068, 1193
ApaLI	GTGCAC	1 cut(s)	758
ApoI	RAATTY	5 cut(s)	275, 419, 631, 668, 1004
AsiGI	ACCGGT	2 cut(s)	717, 1293
Asp700I	GAANNNNTTC	2 cut(s)	155, 486
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	383, 656
AsuHPI	GGTGA	4 cut(s)	229, 461, 1030, 1181
AvaI	CYCGRG	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	762
BalI	TGGCCA	1 cut(s)	1070
BanII	GRGCYC	1 cut(s)	935
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	762, 935
BccI	CCATC	5 cut(s)	203, 586, 848, 1009, 1166
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	844
BclI	TGATCA	2 cut(s)	705, 780
BcoDI	GTCTC	3 cut(s)	39, 346, 1112
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	1 cut(s)	1229
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	1230
Bme1390I	CCNGG	1 cut(s)	844
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	383, 656
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	1 cut(s)	844
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	746
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	49, 146, 263, 843
BsaWI	WCCGGW	2 cut(s)	717, 1293
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 724
Bse118I	RCCGGY	2 cut(s)	717, 1293
Bse1I	ACTGG	3 cut(s)	114, 229, 869
Bse3DI	GCAATG	1 cut(s)	1017
BseBI	CCWGG	1 cut(s)	844
BseDI	CCNNGG	4 cut(s)	49, 146, 263, 843
BseGI	GGATG	3 cut(s)	85, 409, 859
BseLI	CCNNNNNNNGG	2 cut(s)	580, 724
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	1 cut(s)	948
BseNI	ACTGG	3 cut(s)	114, 229, 869
BseSI	GKGCMC	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	563
BshFI	GGCC	4 cut(s)	385, 657, 1070, 1195
BshTI	ACCGGT	2 cut(s)	717, 1293
BsiHKAI	GWGCWC	2 cut(s)	762, 935
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	718, 1294
BslI	CCNNNNNNNGG	2 cut(s)	580, 724
BsmAI	GTCTC	3 cut(s)	39, 346, 1112
BsmBI	CGTCTC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	385, 657, 1070, 1195
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	762, 935
Bsp143I	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	637, 1228
BspANI	GGCC	4 cut(s)	385, 657, 1070, 1195
BspCNI	CTCAG	1 cut(s)	947
BspLI	GGNNCC	1 cut(s)	658
BspPI	GGATC	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	1017
BsrFI	RCCGGY	2 cut(s)	717, 1293
BsrI	ACTGG	3 cut(s)	114, 229, 869
BssAI	RCCGGY	2 cut(s)	717, 1293
BssECI	CCNNGG	4 cut(s)	49, 146, 263, 843
BssMI	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	3 cut(s)	49, 146, 263
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	5 cut(s)	62, 444, 757, 839, 1148
Bst6I	CTCTTC	2 cut(s)	685, 1273
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	335, 934, 1133
BstF5I	GGATG	3 cut(s)	85, 409, 859
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	6 cut(s)	243, 454, 682, 708, 783, 904
BstMAI	GTCTC	3 cut(s)	39, 346, 1112
BstMBI	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	757, 1036
BstNI	CCWGG	1 cut(s)	844
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	842
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	762
BstXI	CCANNNNNNTGG	2 cut(s)	113, 1078
BsuRI	GGCC	4 cut(s)	385, 657, 1070, 1195
BtsCI	GGATG	3 cut(s)	85, 409, 859
BtsIMutI	CAGTG	2 cut(s)	708, 790
Cac8I	GCNNGC	1 cut(s)	508
CaiI	CAGNNNCTG	1 cut(s)	843
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	2 cut(s)	717, 1293
Cfr13I	GGNCC	2 cut(s)	383, 656
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	5 cut(s)	117, 169, 835, 927, 987
CspAI	ACCGGT	2 cut(s)	717, 1293
CviAII	CATG	3 cut(s)	214, 323, 862
CviQI	GTAC	5 cut(s)	117, 169, 835, 927, 987
DdeI	CTNAG	3 cut(s)	335, 934, 1133
DpnI	GATC	6 cut(s)	242, 453, 681, 707, 782, 903
DpnII	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	1068
Eam1104I	CTCTTC	2 cut(s)	685, 1273
EarI	CTCTTC	2 cut(s)	685, 1273
Ecl136II	GAGCTC	1 cut(s)	933
Eco130I	CCWWGG	3 cut(s)	49, 146, 263
Eco24I	GRGCYC	1 cut(s)	935
Eco31I	GGTCTC	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	933
Eco57I	CTGAAG	2 cut(s)	1106, 1194
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	933
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	842
EcoT14I	CCWWGG	3 cut(s)	49, 146, 263
EcoT38I	GRGCYC	1 cut(s)	935
ErhI	CCWWGG	3 cut(s)	49, 146, 263
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	3 cut(s)	217, 326, 865
FatI	CATG	3 cut(s)	213, 322, 861
FauNDI	CATATG	1 cut(s)	910
FbaI	TGATCA	2 cut(s)	705, 780
Fnu4HI	GCNGC	1 cut(s)	1229
FokI	GGATG	3 cut(s)	92, 416, 866
FriOI	GRGCYC	1 cut(s)	935
Fsp4HI	GCNGC	1 cut(s)	1229
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	1229
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	746
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	385, 657, 1070, 1195
HapII	CCGG	2 cut(s)	718, 1294
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	217, 326, 865
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	1123
HinfI	GANTC	6 cut(s)	389, 625, 662, 827, 896, 1265
HpaII	CCGG	2 cut(s)	718, 1294
HphI	GGTGA	4 cut(s)	229, 461, 1030, 1181
Hpy166II	GTNNAC	5 cut(s)	56, 128, 760, 1021, 1105
Hpy188I	TCNGA	8 cut(s)	141, 245, 479, 667, 901, 937, 1213, 1224
Hpy188III	TCNNGA	6 cut(s)	206, 416, 491, 725, 1112, 1235
Hpy8I	GTNNAC	5 cut(s)	56, 128, 760, 1021, 1105
Hpy99I	CGWCG	1 cut(s)	896
HpyAV	CCTTC	1 cut(s)	1084
HpyCH4III	ACNGT	5 cut(s)	62, 444, 757, 839, 1148
HpyCH4V	TGCA	5 cut(s)	439, 544, 760, 775, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	757, 1036
HpyF3I	CTNAG	3 cut(s)	335, 934, 1133
Hsp92II	CATG	3 cut(s)	217, 326, 865
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	705, 780
Kzo9I	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
LmnI	GCTCC	2 cut(s)	31, 737
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	831
MaeIII	GTNAC	2 cut(s)	62, 217
MalI	GATC	6 cut(s)	242, 453, 681, 707, 782, 903
MboI	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
MboII	GAAGA	6 cut(s)	262, 527, 702, 1099, 1192, 1260
MhlI	GDGCHC	2 cut(s)	762, 935
MlsI	TGGCCA	1 cut(s)	1070
MluNI	TGGCCA	1 cut(s)	1070
MlyI	GAGTC	4 cut(s)	634, 671, 905, 1259
MnlI	CCTC	4 cut(s)	15, 686, 916, 947
Mox20I	TGGCCA	1 cut(s)	1070
MroXI	GAANNNNTTC	2 cut(s)	155, 486
MscI	TGGCCA	1 cut(s)	1070
MseI	TTAA	7 cut(s)	195, 273, 363, 423, 534, 585, 1155
MslI	CAYNNNNRTG	3 cut(s)	288, 351, 555
Msp20I	TGGCCA	1 cut(s)	1070
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	718, 1294
MspR9I	CCNGG	1 cut(s)	844
MvaI	CCWGG	1 cut(s)	844
MwoI	GCNNNNNNNGC	2 cut(s)	757, 1036
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
NlaIII	CATG	3 cut(s)	217, 326, 865
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	865
OliI	CACNNNNGTG	1 cut(s)	288
PdmI	GAANNNNTTC	2 cut(s)	155, 486
PfeI	GAWTC	2 cut(s)	389, 827
PinAI	ACCGGT	2 cut(s)	717, 1293
PkrI	GCNGC	1 cut(s)	1230
PleI	GAGTC	4 cut(s)	633, 670, 904, 1259
PpsI	GAGTC	4 cut(s)	633, 670, 904, 1259
PsiI	TTATAA	2 cut(s)	744, 1256
Psp124BI	GAGCTC	1 cut(s)	935
Psp6I	CCWGG	1 cut(s)	842
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	842
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	2 cut(s)	383, 656
PstNI	CAGNNNCTG	1 cut(s)	843
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	5 cut(s)	118, 170, 836, 928, 988
RsaNI	GTAC	5 cut(s)	117, 169, 835, 927, 987
RseI	CAYNNNNRTG	3 cut(s)	288, 351, 555
SacI	GAGCTC	1 cut(s)	935
SaqAI	TTAA	7 cut(s)	195, 273, 363, 423, 534, 585, 1155
SatI	GCNGC	1 cut(s)	1229
Sau3AI	GATC	6 cut(s)	240, 451, 679, 705, 780, 901
Sau96I	GGNCC	2 cut(s)	383, 656
SchI	GAGTC	4 cut(s)	634, 671, 905, 1259
ScrFI	CCNGG	1 cut(s)	844
SduI	GDGCHC	2 cut(s)	762, 935
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	3 cut(s)	288, 351, 555
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SsiI	CCGC	2 cut(s)	637, 1228
SspI	AATATT	2 cut(s)	486, 792
SspMI	CTAG	1 cut(s)	831
SstI	GAGCTC	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	842
StyI	CCWWGG	3 cut(s)	49, 146, 263
TaaI	ACNGT	5 cut(s)	62, 444, 757, 839, 1148
TaqI	TCGA	3 cut(s)	207, 894, 1113
TauI	GCSGC	1 cut(s)	1231
TfiI	GAWTC	2 cut(s)	389, 827
Tru1I	TTAA	7 cut(s)	195, 273, 363, 423, 534, 585, 1155
Tru9I	TTAA	7 cut(s)	195, 273, 363, 423, 534, 585, 1155
TscAI	CASTG	2 cut(s)	708, 790
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	268, 420, 985
TspRI	CASTG	2 cut(s)	708, 790
VneI	GTGCAC	1 cut(s)	758
XapI	RAATTY	5 cut(s)	275, 419, 631, 668, 1004
XceI	RCATGY	1 cut(s)	865
XmnI	GAANNNNTTC	2 cut(s)	155, 486
XspI	CTAG	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.