Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

4639099 .. 4640580

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0060200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACCACTGACCCGAGCCACTCGGAGACCACCACCACCGAGTCGACCAGCTTCAACTCGTCTTCATTCTCCTCCTCCGCCTCTCCGCGCTCCCCGGGTCAGAATAACCCGTCACCAGGAGACTCCAACCCGAACGAGAAGCGGGTCAGCAGCAAACGGGCCAGGGAGAGCAGCAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCGTGGGGCAAATGGGTATCCGAAATCCGCGAGCCCAGGAAGAAGAATCGGATCTGGCTCGGCACCTTCTCCACCCCCGAAATGGCGGCGCGTGCCCACGACGTCGCCGCCTTGACCATCAAAGGCGACTCCGCCATCCTCAACTTCCCCGCCTTATCCGGGTCATTGCCCCGACCCGACTCCAACTCGCCCCGAGACATCCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGACCCACCACCGCCGCCGCCTCCGCCGCCGTCGTCATCGACATTGTCGCAATCGTCATCCTCGTCGTCAATGGCCGACGCCGGAACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGGACGAGCTACGAGTCGGCCGAGTCGGAGTTCGTGTTCGAGGACTCGGTGGAGGGGTGGCTCTACCCTCCGCAGCCGTGGTGGCAAAATGGTCATTTTGGAGAAGAGTATGGGTATATTAGGAATTACGATATGATAATGGCACCGGAGCCAGCCCTATGTGTTGAGGACCAGTTGTGGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

251

Amino Acids

27.37

Weight (kDa)

5.1

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	62 - 112	1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	272, 709
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	3 cut(s)	88, 240, 301
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	2 cut(s)	513, 585
AcyI	GRCGYC	2 cut(s)	312, 519
AfiI	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 566
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	4 cut(s)	115, 161, 245, 564
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
AluBI	AGCT	4 cut(s)	51, 538, 556, 576
AluI	AGCT	4 cut(s)	51, 538, 556, 576
Alw26I	GTCTC	3 cut(s)	20, 114, 399
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	3 cut(s)	13, 94, 402
AoxI	GGCC	3 cut(s)	159, 513, 585
ApeKI	GCWGC	5 cut(s)	150, 171, 174, 556, 640
AspLEI	GCGC	2 cut(s)	90, 301
AspS9I	GGNCC	4 cut(s)	159, 199, 442, 736
AsuC2I	CCSGG	4 cut(s)	95, 96, 185, 370
AsuHPI	GGTGA	1 cut(s)	105
AvaI	CYCGRG	3 cut(s)	13, 94, 402
AvaII	GGWCC	3 cut(s)	199, 442, 736
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	2 cut(s)	272, 709
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	162, 183, 186, 543, 652
BccI	CCATC	2 cut(s)	335, 353
BceAI	ACGGC	2 cut(s)	454, 628
BciT130I	CCWGG	4 cut(s)	117, 163, 247, 566
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	4 cut(s)	95, 96, 185, 370
BcoDI	GTCTC	3 cut(s)	20, 114, 399
BfuI	GTATCC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	649
Bme1390I	CCNGG	8 cut(s)	95, 96, 117, 163, 185, 247, 370, 566
Bme18I	GGWCC	3 cut(s)	199, 442, 736
BmeT110I	CYCGRG	3 cut(s)	13, 94, 402
BmgT120I	GGNCC	4 cut(s)	159, 199, 442, 736
BmiI	GGNNCC	5 cut(s)	200, 274, 444, 711, 717
BmrFI	CCNGG	8 cut(s)	95, 96, 117, 163, 185, 247, 370, 566
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	4 cut(s)	95, 96, 185, 370
BsaHI	GRCGYC	2 cut(s)	312, 519
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	7 cut(s)	93, 94, 162, 245, 438, 565, 644
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 566
Bse1I	ACTGG	1 cut(s)	739
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	4 cut(s)	117, 163, 247, 566
BseDI	CCNNGG	7 cut(s)	93, 94, 162, 245, 438, 565, 644
BseGI	GGATG	3 cut(s)	345, 408, 497
BseLI	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 566
BseMI	GCAATG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	3 cut(s)	61, 64, 548
BseSI	GKGCMC	1 cut(s)	307
BseX3I	CGGCCG	1 cut(s)	585
BseXI	GCAGC	5 cut(s)	162, 183, 186, 543, 652
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	3 cut(s)	88, 240, 301
Bsh1285I	CGRYCG	1 cut(s)	588
BshFI	GGCC	3 cut(s)	161, 515, 587
BshNI	GGYRCC	2 cut(s)	272, 709
BsiEI	CGRYCG	1 cut(s)	588
BsiHKCI	CYCGRG	3 cut(s)	13, 94, 402
BsiSI	CCGG	6 cut(s)	95, 185, 369, 522, 530, 713
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	5 cut(s)	116, 208, 292, 369, 566
BsmAI	GTCTC	3 cut(s)	20, 114, 399
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	161, 515, 587
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	3 cut(s)	13, 94, 402
Bsp1286I	GDGCHC	2 cut(s)	246, 307
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	3 cut(s)	161, 515, 587
BspFNI	CGCG	3 cut(s)	88, 240, 301
BspLI	GGNNCC	5 cut(s)	200, 274, 444, 711, 717
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	2 cut(s)	272, 709
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	739
BssECI	CCNNGG	7 cut(s)	93, 94, 162, 245, 438, 565, 644
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	2 cut(s)	312, 519
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	4 cut(s)	117, 163, 247, 566
Bst6I	CTCTTC	1 cut(s)	666
BstACI	GRCGYC	2 cut(s)	312, 519
BstC8I	GCNNGC	5 cut(s)	179, 210, 242, 303, 720
BstDSI	CCRYGG	2 cut(s)	438, 644
BstF5I	GGATG	3 cut(s)	345, 408, 497
BstFNI	CGCG	3 cut(s)	88, 240, 301
BstHHI	GCGC	2 cut(s)	90, 301
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	3 cut(s)	20, 114, 399
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	1 cut(s)	588
BstMWI	GCNNNNNNNGC	8 cut(s)	302, 422, 428, 431, 463, 466, 535, 649
BstNI	CCWGG	4 cut(s)	117, 163, 247, 566
BstSCI	CCNGG	8 cut(s)	93, 94, 115, 161, 183, 245, 368, 564
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	3 cut(s)	88, 240, 301
BstV1I	GCAGC	5 cut(s)	162, 183, 186, 543, 652
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	161, 515, 587
BtgI	CCRYGG	2 cut(s)	438, 644
BtsCI	GGATG	3 cut(s)	345, 408, 497
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	5 cut(s)	179, 210, 242, 303, 720
CfoI	GCGC	2 cut(s)	90, 301
Cfr13I	GGNCC	4 cut(s)	159, 199, 442, 736
Cfr9I	CCCGGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	527
CviAII	CATG	1 cut(s)	439
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	2 cut(s)	513, 585
EagI	CGGCCG	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	3 cut(s)	67, 331, 453
EclXI	CGGCCG	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	199, 442, 736
Eco52I	CGGCCG	1 cut(s)	585
Eco88I	CYCGRG	3 cut(s)	13, 94, 402
EcoRII	CCWGG	4 cut(s)	115, 161, 245, 564
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	1 cut(s)	442
FaiI	YATR	5 cut(s)	440, 678, 684, 701, 727
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	1 cut(s)	438
FauI	CCCGC	3 cut(s)	135, 201, 367
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	3 cut(s)	332, 395, 484
FriOI	GRGCYC	1 cut(s)	246
GlaI	GCGC	2 cut(s)	89, 300
GsaI	CCCAGC	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	161, 515, 587
HapII	CCGG	6 cut(s)	95, 185, 369, 522, 530, 713
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	90, 301
Hin1I	GRCGYC	2 cut(s)	312, 519
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	2 cut(s)	88, 299
HinP1I	GCGC	2 cut(s)	88, 299
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	8 cut(s)	41, 122, 256, 338, 389, 581, 590, 611
HpaII	CCGG	6 cut(s)	95, 185, 369, 522, 530, 713
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	2 cut(s)	45, 190
Hpy188I	TCNGA	6 cut(s)	25, 102, 203, 232, 261, 595
Hpy8I	GTNNAC	2 cut(s)	45, 190
Hpy99I	CGWCG	5 cut(s)	314, 317, 475, 508, 521
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	8 cut(s)	302, 422, 428, 431, 463, 466, 535, 649
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	2 cut(s)	312, 519
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	2 cut(s)	88, 299
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	95, 535, 553, 715
Lsp1109I	GCAGC	5 cut(s)	162, 183, 186, 543, 652
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	4 cut(s)	54, 262, 265, 683
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	246, 307
MluCI	AATT	1 cut(s)	691
MlyI	GAGTC	7 cut(s)	50, 116, 332, 383, 590, 599, 605
MmeI	TCCRAC	3 cut(s)	150, 417, 573
MseI	TTAA	1 cut(s)	754
MspI	CCGG	6 cut(s)	95, 185, 369, 522, 530, 713
MspR9I	CCNGG	8 cut(s)	95, 96, 117, 163, 185, 247, 370, 566
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	4 cut(s)	117, 163, 247, 566
MvnI	CGCG	3 cut(s)	88, 240, 301
MwoI	GCNNNNNNNGC	8 cut(s)	302, 422, 428, 431, 463, 466, 535, 649
NciI	CCSGG	4 cut(s)	95, 96, 185, 370
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	5 cut(s)	200, 274, 444, 711, 717
NmeAIII	GCCGAG	3 cut(s)	249, 585, 613
NmuCI	GTSAC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	500, 585
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	484
PleI	GAGTC	7 cut(s)	49, 116, 332, 383, 589, 598, 605
PpsI	GAGTC	7 cut(s)	49, 116, 332, 383, 589, 598, 605
Psp6I	CCWGG	4 cut(s)	115, 161, 245, 564
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	4 cut(s)	115, 161, 245, 564
PspN4I	GGNNCC	5 cut(s)	200, 274, 444, 711, 717
PspPI	GGNCC	4 cut(s)	159, 199, 442, 736
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	484
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	754
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	4 cut(s)	159, 199, 442, 736
SchI	GAGTC	7 cut(s)	50, 116, 332, 383, 590, 599, 605
ScrFI	CCNGG	8 cut(s)	95, 96, 117, 163, 185, 247, 370, 566
SduI	GDGCHC	2 cut(s)	246, 307
SetI	ASST	6 cut(s)	53, 278, 315, 540, 558, 578
SinI	GGWCC	3 cut(s)	199, 442, 736
SmaI	CCCGGG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	691
StyD4I	CCNGG	8 cut(s)	93, 94, 115, 161, 183, 245, 368, 564
StyI	CCWWGG	1 cut(s)	438
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	44, 479, 606
TasI	AATT	1 cut(s)	691
TauI	GCSGC	9 cut(s)	299, 320, 419, 422, 425, 434, 457, 460, 469
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	754
Tru9I	TTAA	1 cut(s)	754
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	5 cut(s)	150, 171, 174, 556, 640
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	54
TspMI	CCCGGG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	484
VpaK11BI	GGWCC	3 cut(s)	199, 442, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.