Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004291.1

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3345

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgtcatgcaactgcgatatcgaaattgcagctcttcttccgcctgaatctgaatctgacccatctcactgtaatcctccgctacccacatcccaacatcaagaacaatctctatctccaaaccaagtcctggatgttgcagaaccagcgatcctgggatcatcgtcgccgccgccggagctagacttcccaatcgaatggccctccgacgggaagctcagcctggagtgggtccagaacctcatgtccgtcttcgattggtcttcaagaaatctaacaccaacccaattcccggaggttcttcccgtccgggttttcgattcgttggttctttgcgcctccaagattctccacaaagaacccaattgcgtcaagatcgacgactgcggccctgagttgatgccgaaaagcgtttatcttttgagaggtaaccatgaatccaagtactgtacttctgtttatgggtttgagaaggaagtgctagtcaagtatagagatgacgatgatggtaaagataaagtaggtaaacacgtgtatagaaaatgcctgggatgctttgaagggcttcctcttgcgtccattataaatggccatgtatatactgctcatggagggctgtttaggagcattgcagtgacaccagctaagaggggaaagggaaagaagaatcgaaagattgttttgaattcggagactagtactttggttctggggtctttagatgagttgtctaaggctcggagatcggttcttgatcctccgtgggaaggtttgaacttgatcccgggtgatgtgctgtggtcggatccctccatgaaacctggtcttgctcccaataaagtgagaggcattggtctgatttggggtcctgattgcactgaggactttcttaagaaatttcagctcaagttgattatcagatcacacgaaggacctgatgcgcgtgaaaagaggccaggtcttggaggcatggatcaagggtacaccatagatcacatcgtggagtcagggaagctcattactttatttagtgctccagattacccacaatttcagggtactgaggagaggtatagaaataaaggggcttacatcgttctggaaccccctaattttgatcatcctgtatttcatagttttgaagcaattactccaagaccacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

388

Amino Acids

43.13

Weight (kDa)

5.81

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AccB7I	CCANNNNNTGG	2 cut(s)	130, 962
AccII	CGCG	1 cut(s)	943
AciI	CCGC	5 cut(s)	41, 80, 170, 173, 387
AclWI	GGATC	7 cut(s)	145, 166, 749, 775, 800, 813, 981
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	2 cut(s)	685, 896
AcvI	CACGTG	1 cut(s)	532
AdeI	CACNNNGTG	1 cut(s)	1000
AfaI	GTAC	5 cut(s)	446, 451, 700, 983, 1060
AfiI	CCNNNNNNNGG	7 cut(s)	130, 209, 210, 229, 292, 767, 962
AflII	CTTAAG	1 cut(s)	890
AflIII	ACRYGT	2 cut(s)	529, 531
AgsI	TTSAA	5 cut(s)	267, 560, 685, 775, 1142
AhlI	ACTAGT	1 cut(s)	695
AjnI	CCWGG	6 cut(s)	129, 153, 222, 546, 820, 955
AloI	GAACNNNNNNTCC	4 cut(s)	135, 167, 230, 262
AluBI	AGCT	6 cut(s)	32, 181, 217, 644, 904, 1015
AluI	AGCT	6 cut(s)	32, 181, 217, 644, 904, 1015
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	7 cut(s)	145, 166, 749, 775, 800, 813, 981
Ama87I	CYCGRG	1 cut(s)	784
AoxI	GGCC	4 cut(s)	200, 388, 589, 953
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	685, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	2 cut(s)	338, 943
AspS9I	GGNCC	5 cut(s)	201, 232, 389, 866, 932
AsuC2I	CCSGG	4 cut(s)	293, 311, 785, 786
AsuHPI	GGTGA	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	784
AvaII	GGWCC	3 cut(s)	232, 866, 932
BalI	TGGCCA	1 cut(s)	591
BamHI	GGATCC	1 cut(s)	805
BbrPI	CACGTG	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	244, 255
Bbv12I	GWGCWC	1 cut(s)	1036
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	70, 500
BciT130I	CCWGG	6 cut(s)	131, 155, 224, 548, 822, 957
BclI	TGATCA	1 cut(s)	1117
BcnI	CCSGG	4 cut(s)	293, 311, 785, 786
BcoDI	GTCTC	1 cut(s)	686
BcuI	ACTAGT	1 cut(s)	695
BfaI	CTAG	3 cut(s)	182, 482, 696
BfrI	CTTAAG	1 cut(s)	890
BisI	GCNGC	4 cut(s)	30, 170, 173, 388
BlpI	GCTNAGC	1 cut(s)	218
BlsI	GCNGC	4 cut(s)	31, 171, 174, 389
BmcAI	AGTACT	2 cut(s)	446, 700
Bme18I	GGWCC	3 cut(s)	232, 866, 932
BmeT110I	CYCGRG	1 cut(s)	784
BmgT120I	GGNCC	5 cut(s)	201, 232, 389, 866, 932
BmiI	GGNNCC	4 cut(s)	233, 807, 867, 1104
BmsI	GCATC	3 cut(s)	390, 542, 928
BpiI	GAAGAC	2 cut(s)	244, 255
BpmI	CTGGAG	2 cut(s)	245, 1020
Bpu1102I	GCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	890
BpuMI	CCSGG	4 cut(s)	293, 311, 785, 786
BsaAI	YACGTR	1 cut(s)	532
BsaJI	CCNNGG	4 cut(s)	154, 547, 761, 784
Bsc4I	CCNNNNNNNGG	7 cut(s)	130, 209, 210, 229, 292, 767, 962
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	6 cut(s)	131, 155, 224, 548, 822, 957
BseDI	CCNNGG	4 cut(s)	154, 547, 761, 784
BseGI	GGATG	4 cut(s)	89, 139, 557, 1120
BseLI	CCNNNNNNNGG	7 cut(s)	130, 209, 210, 229, 292, 767, 962
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	232, 384, 870, 1053
BseRI	GAGGAG	1 cut(s)	1079
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	943
BshFI	GGCC	4 cut(s)	202, 390, 591, 955
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiHKCI	CYCGRG	1 cut(s)	784
BsiSI	CCGG	4 cut(s)	176, 293, 310, 785
BslI	CCNNNNNNNGG	7 cut(s)	130, 209, 210, 229, 292, 767, 962
BsmAI	GTCTC	1 cut(s)	686
BsnI	GGCC	4 cut(s)	202, 390, 591, 955
BsoBI	CYCGRG	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	1036
Bsp1720I	GCTNAGC	1 cut(s)	218
BspACI	CCGC	5 cut(s)	41, 80, 170, 173, 387
BspANI	GGCC	4 cut(s)	202, 390, 591, 955
BspCNI	CTCAG	4 cut(s)	231, 385, 871, 1054
BspFNI	CGCG	1 cut(s)	943
BspLI	GGNNCC	4 cut(s)	233, 807, 867, 1104
BspPI	GGATC	7 cut(s)	145, 166, 749, 775, 800, 813, 981
BspQI	GCTCTTC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	4 cut(s)	154, 547, 761, 784
Bst2UI	CCWGG	6 cut(s)	131, 155, 224, 548, 822, 957
Bst4CI	ACNGT	2 cut(s)	71, 449
Bst6I	CTCTTC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	890
BstBAI	YACGTR	1 cut(s)	532
BstDEI	CTNAG	6 cut(s)	218, 393, 645, 732, 879, 1062
BstDSI	CCRYGG	1 cut(s)	761
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	89, 139, 557, 1120
BstFNI	CGCG	1 cut(s)	943
BstHHI	GCGC	2 cut(s)	338, 943
BstMAI	GTCTC	1 cut(s)	686
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 178, 552
BstNI	CCWGG	6 cut(s)	131, 155, 224, 548, 822, 957
BstPI	GGTNACC	1 cut(s)	428
BstUI	CGCG	1 cut(s)	943
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	244, 255
BstX2I	RGATCY	1 cut(s)	805
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	4 cut(s)	202, 390, 591, 955
BtgI	CCRYGG	1 cut(s)	761
BtsCI	GGATG	4 cut(s)	89, 139, 557, 1120
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	3 cut(s)	67, 639, 876
CfoI	GCGC	2 cut(s)	338, 943
Cfr13I	GGNCC	5 cut(s)	201, 232, 389, 866, 932
Cfr9I	CCCGGG	1 cut(s)	784
CseI	GACGC	2 cut(s)	358, 564
CsiI	ACCWGGT	1 cut(s)	820
Csp6I	GTAC	5 cut(s)	445, 450, 699, 982, 1059
CviAII	CATG	7 cut(s)	6, 244, 434, 593, 608, 814, 970
CviQI	GTAC	5 cut(s)	445, 450, 699, 982, 1059
DdeI	CTNAG	6 cut(s)	218, 393, 645, 732, 879, 1062
DraIII	CACNNNGTG	1 cut(s)	1000
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	232, 866, 932
Eco72I	CACGTG	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	784
Eco91I	GGTNACC	1 cut(s)	428
EcoO109I	RGGNCCY	2 cut(s)	866, 932
EcoO65I	GGTNACC	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	6 cut(s)	129, 153, 222, 546, 820, 955
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	7 cut(s)	9, 247, 437, 596, 611, 817, 973
FatI	CATG	7 cut(s)	5, 243, 433, 592, 607, 813, 969
FbaI	TGATCA	1 cut(s)	1117
Fnu4HI	GCNGC	4 cut(s)	30, 170, 173, 388
FokI	GGATG	4 cut(s)	76, 146, 564, 1107
Fsp4HI	GCNGC	4 cut(s)	30, 170, 173, 388
FspBI	CTAG	3 cut(s)	182, 482, 696
GlaI	GCGC	2 cut(s)	337, 942
GluI	GCNGC	4 cut(s)	30, 170, 173, 388
GsuI	CTGGAG	2 cut(s)	245, 1020
HaeIII	GGCC	4 cut(s)	202, 390, 591, 955
HapII	CCGG	4 cut(s)	176, 293, 310, 785
HgaI	GACGC	2 cut(s)	358, 564
HhaI	GCGC	2 cut(s)	338, 943
Hin1II	CATG	7 cut(s)	9, 247, 437, 596, 611, 817, 973
Hin6I	GCGC	2 cut(s)	336, 941
HinP1I	GCGC	2 cut(s)	336, 941
HinfI	GANTC	7 cut(s)	47, 53, 320, 346, 437, 667, 1004
HpaII	CCGG	4 cut(s)	176, 293, 310, 785
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	2 cut(s)	527, 984
Hpy188I	TCNGA	8 cut(s)	52, 58, 208, 691, 741, 805, 858, 920
Hpy188III	TCNNGA	8 cut(s)	101, 235, 267, 373, 752, 869, 1037, 1100
Hpy8I	GTNNAC	2 cut(s)	527, 984
Hpy99I	CGWCG	3 cut(s)	169, 212, 383
HpyAV	CCTTC	4 cut(s)	466, 554, 761, 923
HpyCH4III	ACNGT	2 cut(s)	71, 449
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	5 cut(s)	9, 29, 140, 632, 876
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 178, 552
HpyF3I	CTNAG	6 cut(s)	218, 393, 645, 732, 879, 1062
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	7 cut(s)	9, 247, 437, 596, 611, 817, 973
HspAI	GCGC	2 cut(s)	336, 941
Ksp22I	TGATCA	1 cut(s)	1117
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	4 cut(s)	178, 624, 835, 1039
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	390, 542, 928
MabI	ACCWGGT	1 cut(s)	820
MaeI	CTAG	3 cut(s)	182, 482, 696
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	428, 634
MboII	GAAGA	6 cut(s)	26, 29, 244, 255, 293, 676
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	1 cut(s)	1036
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	8 cut(s)	24, 287, 364, 685, 896, 1049, 1111, 1146
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	2 cut(s)	231, 783
Mox20I	TGGCCA	1 cut(s)	591
MroXI	GAANNNNTTC	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	1 cut(s)	891
MslI	CAYNNNNRTG	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	4 cut(s)	176, 293, 310, 785
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	6 cut(s)	131, 155, 224, 548, 822, 957
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	3 cut(s)	146, 178, 552
NciI	CCSGG	4 cut(s)	293, 311, 785, 786
NlaIII	CATG	7 cut(s)	9, 247, 437, 596, 611, 817, 973
NlaIV	GGNNCC	4 cut(s)	233, 807, 867, 1104
NmuCI	GTSAC	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	6 cut(s)	47, 53, 320, 346, 437, 667
PflMI	CCANNNNNTGG	2 cut(s)	130, 962
PfoI	TCCNGGA	2 cut(s)	129, 291
PkrI	GCNGC	4 cut(s)	31, 171, 174, 389
PleI	GAGTC	1 cut(s)	1012
PmaCI	CACGTG	1 cut(s)	532
PmlI	CACGTG	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	1012
Ppu21I	YACGTR	1 cut(s)	532
PpuMI	RGGWCCY	2 cut(s)	866, 932
PsiI	TTATAA	1 cut(s)	584
Psp5II	RGGWCCY	2 cut(s)	866, 932
Psp6I	CCWGG	6 cut(s)	129, 153, 222, 546, 820, 955
PspCI	CACGTG	1 cut(s)	532
PspEI	GGTNACC	1 cut(s)	428
PspGI	CCWGG	6 cut(s)	129, 153, 222, 546, 820, 955
PspN4I	GGNNCC	4 cut(s)	233, 807, 867, 1104
PspPI	GGNCC	5 cut(s)	201, 232, 389, 866, 932
PspPPI	RGGWCCY	2 cut(s)	866, 932
PsuI	RGATCY	1 cut(s)	805
RsaI	GTAC	5 cut(s)	446, 451, 700, 983, 1060
RsaNI	GTAC	5 cut(s)	445, 450, 699, 982, 1059
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	891
SatI	GCNGC	4 cut(s)	30, 170, 173, 388
Sau96I	GGNCC	5 cut(s)	201, 232, 389, 866, 932
ScaI	AGTACT	2 cut(s)	446, 700
SchI	GAGTC	1 cut(s)	1013
SduI	GDGCHC	1 cut(s)	1036
SexAI	ACCWGGT	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	390, 542, 928
SinI	GGWCC	3 cut(s)	232, 866, 932
SmaI	CCCGGG	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	890, 905
SmoI	CTYRAG	2 cut(s)	890, 905
SpeI	ACTAGT	1 cut(s)	695
Sse9I	AATT	8 cut(s)	24, 287, 364, 685, 896, 1049, 1111, 1146
SsiI	CCGC	5 cut(s)	41, 80, 170, 173, 387
SspMI	CTAG	3 cut(s)	182, 482, 696
TaaI	ACNGT	2 cut(s)	71, 449
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	6 cut(s)	21, 195, 255, 318, 378, 670
TasI	AATT	8 cut(s)	24, 287, 364, 685, 896, 1049, 1111, 1146
TatI	WGTACW	3 cut(s)	444, 449, 698
TauI	GCSGC	3 cut(s)	172, 175, 390
TfiI	GAWTC	6 cut(s)	47, 53, 320, 346, 437, 667
Tru1I	TTAA	1 cut(s)	891
Tru9I	TTAA	1 cut(s)	891
TscAI	CASTG	3 cut(s)	74, 639, 883
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	3 cut(s)	450, 830, 1121
TspGWI	ACGGA	2 cut(s)	238, 750
TspMI	CCCGGG	1 cut(s)	784
TspRI	CASTG	3 cut(s)	74, 639, 883
Van91I	CCANNNNNTGG	2 cut(s)	130, 962
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	3 cut(s)	232, 866, 932
XapI	RAATTY	2 cut(s)	685, 896
XmaI	CCCGGG	1 cut(s)	784
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	182, 482, 696
ZrmI	AGTACT	2 cut(s)	446, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.