Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008602.1

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

42591 .. 43148

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008602.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtcatgcaactgcgatatcgaaattgcagctcttcttccgcctgaatctgaatctgacccatctcactgtaatcctccgctacccacatcccaacatcaagaacaatctctatctccaaaccaagtcccggatgttgcagaaccagcgatcctgggatcatcgtcgccgccgccggagctagacttcccaatcgaatggccctccgacgggaagctcagcctggagtgggtccagaacctcatgtccgtcttcgattggtcttcaagaaatctaacaccaacccaattcccggaggttcttcccgtccgggttttcgattccttggttctttgcgcctccaagattctccacaaagaacccaattgcgtcaagatcgacgactgcggccctgactccaccgtcgtcgtcgtcggagacgtccacggccagttgcacgacgttctttttcttctgaaggatgctgggtacccttcggagaggtcgtataccgtgccgaggaaattttatttttctatttccatgaattttcaccttccatgcagtcattgcgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

4.59

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
AatII	GACGTC	1 cut(s)	423
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	5 cut(s)	41, 80, 170, 173, 387
AclWI	GGATC	2 cut(s)	145, 166
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	503, 526
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	6 cut(s)	130, 209, 210, 229, 292, 498
AgsI	TTSAA	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	153, 222
AloI	GAACNNNNNNTCC	4 cut(s)	135, 167, 230, 262
AluBI	AGCT	3 cut(s)	32, 181, 217
AluI	AGCT	3 cut(s)	32, 181, 217
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	145, 166
AoxI	GGCC	3 cut(s)	200, 388, 427
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	503, 526
Asp718I	GGTACC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	201, 232, 389
AsuC2I	CCSGG	3 cut(s)	131, 293, 311
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	468
BbsI	GAAGAC	2 cut(s)	244, 255
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	2 cut(s)	155, 224
BcnI	CCSGG	3 cut(s)	131, 293, 311
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	4 cut(s)	30, 170, 173, 388
BlpI	GCTNAGC	1 cut(s)	218
BlsI	GCNGC	4 cut(s)	31, 171, 174, 389
Bme1390I	CCNGG	5 cut(s)	131, 155, 224, 293, 311
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	201, 232, 389
BmiI	GGNNCC	2 cut(s)	233, 470
BmrFI	CCNGG	5 cut(s)	131, 155, 224, 293, 311
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	2 cut(s)	244, 255
BpmI	CTGGAG	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	218
BpuMI	CCSGG	3 cut(s)	131, 293, 311
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	154, 324, 424, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 209, 210, 229, 292, 498
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	155, 224
BseDI	CCNNGG	4 cut(s)	154, 324, 424, 497
BseGI	GGATG	3 cut(s)	89, 139, 466
BseLI	CCNNNNNNNGG	6 cut(s)	130, 209, 210, 229, 292, 498
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	3 cut(s)	202, 390, 429
BshNI	GGYRCC	1 cut(s)	468
BsiSI	CCGG	4 cut(s)	131, 176, 293, 310
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	6 cut(s)	130, 209, 210, 229, 292, 498
BsmAI	GTCTC	1 cut(s)	411
BsmBI	CGTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	202, 390, 429
Bsp143I	GATC	3 cut(s)	150, 158, 375
Bsp1720I	GCTNAGC	1 cut(s)	218
BspACI	CCGC	5 cut(s)	41, 80, 170, 173, 387
BspANI	GGCC	3 cut(s)	202, 390, 429
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	233, 470
BspPI	GGATC	2 cut(s)	145, 166
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	4 cut(s)	154, 324, 424, 497
BssMI	GATC	3 cut(s)	150, 158, 375
BssNAI	GTATAC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	155, 224
Bst4CI	ACNGT	3 cut(s)	71, 403, 493
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	89, 139, 466
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	153, 161, 378
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	3 cut(s)	150, 158, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 178, 549
BstNI	CCWGG	2 cut(s)	155, 224
BstSCI	CCNGG	5 cut(s)	129, 153, 222, 291, 309
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	244, 255
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstZ17I	GTATAC	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	202, 390, 429
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	89, 139, 466
BtsIMutI	CAGTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	201, 232, 389
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	4 cut(s)	6, 244, 523, 540
CviJI	RGCY	7 cut(s)	32, 181, 202, 217, 222, 390, 429
CviKI_1	RGCY	7 cut(s)	32, 181, 202, 217, 222, 390, 429
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	3 cut(s)	152, 160, 377
DpnII	GATC	3 cut(s)	150, 158, 375
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	153, 222
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	4 cut(s)	9, 247, 526, 543
FaiI	YATR	5 cut(s)	7, 245, 489, 524, 541
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	5, 243, 522, 539
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	4 cut(s)	30, 170, 173, 388
FokI	GGATG	3 cut(s)	76, 146, 473
Fsp4HI	GCNGC	4 cut(s)	30, 170, 173, 388
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	4 cut(s)	30, 170, 173, 388
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	202, 390, 429
HapII	CCGG	4 cut(s)	131, 176, 293, 310
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	9, 247, 526, 543
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	5 cut(s)	47, 53, 320, 346, 395
HpaII	CCGG	4 cut(s)	131, 176, 293, 310
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	424, 489
Hpy188I	TCNGA	6 cut(s)	52, 58, 208, 416, 456, 478
Hpy188III	TCNNGA	4 cut(s)	101, 235, 267, 373
Hpy8I	GTNNAC	2 cut(s)	424, 489
Hpy99I	CGWCG	8 cut(s)	169, 212, 383, 407, 410, 413, 416, 443
HpyAV	CCTTC	3 cut(s)	451, 483, 545
HpyCH4III	ACNGT	3 cut(s)	71, 403, 493
HpyCH4IV	ACGT	2 cut(s)	420, 441
HpyCH4V	TGCA	5 cut(s)	9, 29, 140, 436, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 178, 549
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	420, 441
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	9, 247, 526, 543
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	150, 158, 375
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	420, 441
MalI	GATC	3 cut(s)	152, 160, 377
MboI	GATC	3 cut(s)	150, 158, 375
MboII	GAAGA	6 cut(s)	26, 29, 244, 255, 293, 443
MfeI	CAATTG	1 cut(s)	364
MluCI	AATT	5 cut(s)	24, 287, 364, 503, 526
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	2 cut(s)	231, 394
MnlI	CCTC	7 cut(s)	87, 214, 251, 289, 349, 474, 492
MspI	CCGG	4 cut(s)	131, 176, 293, 310
MspR9I	CCNGG	5 cut(s)	131, 155, 224, 293, 311
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	155, 224
MwoI	GCNNNNNNNGC	3 cut(s)	146, 178, 549
NciI	CCSGG	3 cut(s)	131, 293, 311
NdeII	GATC	3 cut(s)	150, 158, 375
NlaIII	CATG	4 cut(s)	9, 247, 526, 543
NlaIV	GGNNCC	2 cut(s)	233, 470
NmeAIII	GCCGAG	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 482
PfeI	GAWTC	4 cut(s)	47, 53, 320, 346
PfoI	TCCNGGA	2 cut(s)	129, 291
PkrI	GCNGC	4 cut(s)	31, 171, 174, 389
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	153, 222
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	2 cut(s)	153, 222
PspN4I	GGNNCC	2 cut(s)	233, 470
PspPI	GGNCC	3 cut(s)	201, 232, 389
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	4 cut(s)	30, 170, 173, 388
Sau3AI	GATC	3 cut(s)	150, 158, 375
Sau96I	GGNCC	3 cut(s)	201, 232, 389
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	5 cut(s)	131, 155, 224, 293, 311
SetI	ASST	9 cut(s)	34, 183, 219, 243, 300, 423, 444, 485, 537
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	232
Sse9I	AATT	5 cut(s)	24, 287, 364, 503, 526
SsiI	CCGC	5 cut(s)	41, 80, 170, 173, 387
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	5 cut(s)	129, 153, 222, 291, 309
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	71, 403, 493
TaiI	ACGT	2 cut(s)	423, 444
TaqI	TCGA	5 cut(s)	21, 195, 255, 318, 378
TasI	AATT	5 cut(s)	24, 287, 364, 503, 526
TauI	GCSGC	3 cut(s)	172, 175, 390
TfiI	GAWTC	4 cut(s)	47, 53, 320, 346
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	503, 526
XmiI	GTMKAC	1 cut(s)	488
XspI	CTAG	1 cut(s)	182
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.