Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

35595024 .. 35597391

Gene Structure 2368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1225000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCTAGATGTCCTTCAGAAAATCGTTTGTTTGTCTTCAATGGCGATTTTATTGGTGTGGAAGGTATTTTTGCCCAAAAGCGTTTATATTCTTAGAGGAAATCATGAATCCAAATACTATAATTCCATTTATGGATTTGAGAAGGAACTGTTGGCAAAGTATGGAGACAAAGGGGATGATGTTTACCAAAAATGTTTTGGGTGCTTTAAGTGTCTCCCTTTGACATCCATTATCGGGAAATATGTATACACTGCTCATGGTGGGCTGTTTCGCAGCACAACGGCATACCTCAAGAAATCAAAGGGAAAGAAGAAAAGGAAAATATCTTTCAATCCTGAACTAAGCATAACATTGTCTCTTGGCATATTTGAAGAATTAAACAAGGCTCAAAGAATGGTTCTGGATCCTCCGTCTGAAGGTTCAAACTTGATTCCTGGTGACGTGCTATGGTCAGATCCATCCATGGATCCCGGTCTTTCTTTGAATCAACTGAGAGGTGCTGGTTTGCTTTGGGGTCCTGACTGCACTGAGGAATTTCTCAAGAAGTTTCAGCTCAAGTTGATTATTAGATCGCATGAAGGCCCTGATGCACGGAAGAAGAGGCCAGGTCTTGGTCTAATGGATAACGGGTTCACCATAGATCACGTTGTGGAGTCAGGGAAGCTCATAACTTTGTTTAGTGCTCCAGACTACCCACAATTTCAGGCAACGGAAGATAGGTACAGAAATAAAGGAGCTTACATCGTTCTAGAACCCCCTACTTTTGATAATCCTGTTATCCGTAGCTTCGAAGCAGTCACTCCAAGACCTCAGGCAACCCCCTTTTATGATTTTGAAGACTTATCTGATTCTGATCAAGAGTCGGACTCTGGGGCGATGGAGACTACCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

298

Amino Acids

33.39

Weight (kDa)

6.9

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	26 - 193	3.5e-14	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	246
AclWI	GGATC	5 cut(s)	398, 411, 449, 461, 474
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	649
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	3 cut(s)	234, 416, 611
AgsI	TTSAA	6 cut(s)	39, 331, 371, 423, 484, 836
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	2 cut(s)	433, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	4 cut(s)	553, 664, 737, 786
AluI	AGCT	4 cut(s)	553, 664, 737, 786
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	4 cut(s)	159, 218, 360, 875
AlwI	GGATC	5 cut(s)	398, 411, 449, 461, 474
AoxI	GGCC	2 cut(s)	580, 602
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	515, 581
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	449, 625
AsuII	TTCGAA	1 cut(s)	789
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	810
BamHI	GGATCC	2 cut(s)	403, 466
BbsI	GAAGAC	2 cut(s)	27, 843
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	2 cut(s)	466, 871
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	2 cut(s)	435, 606
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	4 cut(s)	159, 218, 360, 875
BfaI	CTAG	2 cut(s)	5, 749
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	435, 471, 606
Bme18I	GGWCC	1 cut(s)	515
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	515, 581
BmiI	GGNNCC	3 cut(s)	405, 468, 516
BmrFI	CCNGG	3 cut(s)	435, 471, 606
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	2 cut(s)	27, 843
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpmI	CTGGAG	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	789
BpuEI	CTTGAG	3 cut(s)	275, 524, 539
BpuMI	CCSGG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	852
BsaJI	CCNNGG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 416, 611
Bse21I	CCTNAGG	1 cut(s)	810
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	435, 606
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	3 cut(s)	181, 224, 458
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	3 cut(s)	234, 416, 611
BseMII	CTCAG	3 cut(s)	482, 519, 824
BseXI	GCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	582, 604
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	234, 416, 611
BsmAI	GTCTC	4 cut(s)	159, 218, 360, 875
BsnI	GGCC	2 cut(s)	582, 604
Bsp119I	TTCGAA	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	2 cut(s)	582, 604
BspCNI	CTCAG	3 cut(s)	483, 520, 823
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	405, 468, 516
BspPI	GGATC	5 cut(s)	398, 411, 449, 461, 474
BspT104I	TTCGAA	1 cut(s)	789
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
BssNAI	GTATAC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	435, 606
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	789
BstDEI	CTNAG	5 cut(s)	92, 341, 491, 528, 810
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	181, 224, 458
BstKTI	GATC	6 cut(s)	406, 457, 469, 572, 643, 856
BstMAI	GTCTC	4 cut(s)	159, 218, 360, 875
BstMBI	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
BstNI	CCWGG	2 cut(s)	435, 606
BstSCI	CCNGG	3 cut(s)	433, 469, 604
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	2 cut(s)	27, 843
BstX2I	RGATCY	3 cut(s)	403, 454, 466
BstYI	RGATCY	3 cut(s)	403, 454, 466
BstZ17I	GTATAC	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	582, 604
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	890
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	181, 224, 458
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 525
CciI	TCATGA	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	515, 581
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	4 cut(s)	104, 257, 463, 575
CviJI	RGCY	8 cut(s)	265, 386, 553, 582, 604, 664, 737, 786
CviKI_1	RGCY	8 cut(s)	265, 386, 553, 582, 604, 664, 737, 786
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	5 cut(s)	92, 341, 491, 528, 810
DpnI	GATC	6 cut(s)	405, 456, 468, 571, 642, 855
DpnII	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
DraIII	CACNNNGTG	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	2 cut(s)	515, 581
EcoRII	CCWGG	2 cut(s)	433, 604
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	107, 260, 466, 578
FatI	CATG	4 cut(s)	103, 256, 462, 574
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	3 cut(s)	188, 211, 445
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	2 cut(s)	5, 749
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	582, 604
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	4 cut(s)	107, 260, 466, 578
HinfI	GANTC	7 cut(s)	107, 430, 484, 653, 848, 860, 866
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	449, 625
Hpy166II	GTNNAC	3 cut(s)	184, 247, 633
Hpy188I	TCNGA	6 cut(s)	18, 415, 454, 847, 853, 865
Hpy8I	GTNNAC	3 cut(s)	184, 247, 633
HpyAV	CCTTC	5 cut(s)	23, 55, 136, 410, 572
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	2 cut(s)	441, 645
HpyCH4V	TGCA	2 cut(s)	525, 590
HpyF3I	CTNAG	5 cut(s)	92, 341, 491, 528, 810
HpySE526I	ACGT	2 cut(s)	441, 645
Hsp92II	CATG	4 cut(s)	107, 260, 466, 578
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
LmnI	GCTCC	2 cut(s)	688, 734
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	2 cut(s)	5, 749
MaeII	ACGT	2 cut(s)	441, 645
MaeIII	GTNAC	2 cut(s)	437, 796
MalI	GATC	6 cut(s)	405, 456, 468, 571, 642, 855
MboI	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
MboII	GAAGA	7 cut(s)	27, 322, 383, 607, 610, 725, 848
MflI	RGATCY	3 cut(s)	403, 454, 466
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	4 cut(s)	121, 374, 533, 698
MlyI	GAGTC	3 cut(s)	662, 860, 869
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	7 cut(s)	89, 299, 417, 488, 523, 594, 819
MseI	TTAA	2 cut(s)	207, 377
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	435, 471, 606
MvaI	CCWGG	2 cut(s)	435, 606
NciI	CCSGG	1 cut(s)	471
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
NlaIII	CATG	4 cut(s)	107, 260, 466, 578
NlaIV	GGNNCC	3 cut(s)	405, 468, 516
NmuCI	GTSAC	2 cut(s)	437, 796
NspV	TTCGAA	1 cut(s)	789
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	4 cut(s)	107, 430, 484, 848
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	3 cut(s)	661, 860, 868
PpsI	GAGTC	3 cut(s)	661, 860, 868
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	433, 604
PspGI	CCWGG	2 cut(s)	433, 604
PspN4I	GGNNCC	3 cut(s)	405, 468, 516
PspPI	GGNCC	2 cut(s)	515, 581
PspPPI	RGGWCCY	1 cut(s)	515
PsuI	RGATCY	3 cut(s)	403, 454, 466
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	207, 377
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	6 cut(s)	403, 454, 466, 569, 640, 853
Sau96I	GGNCC	2 cut(s)	515, 581
SchI	GAGTC	3 cut(s)	662, 860, 869
ScrFI	CCNGG	3 cut(s)	435, 471, 606
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	577
SfuI	TTCGAA	1 cut(s)	789
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	3 cut(s)	290, 539, 554
SmoI	CTYRAG	3 cut(s)	290, 539, 554
Sse9I	AATT	4 cut(s)	121, 374, 533, 698
SspMI	CTAG	2 cut(s)	5, 749
StyD4I	CCNGG	3 cut(s)	433, 469, 604
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	2 cut(s)	444, 648
TaqI	TCGA	1 cut(s)	789
TasI	AATT	4 cut(s)	121, 374, 533, 698
TfiI	GAWTC	4 cut(s)	107, 430, 484, 848
Tru1I	TTAA	2 cut(s)	207, 377
Tru9I	TTAA	2 cut(s)	207, 377
TscAI	CASTG	2 cut(s)	256, 532
TseFI	GTSAC	2 cut(s)	437, 796
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	2 cut(s)	437, 796
TspDTI	ATGAA	2 cut(s)	120, 591
TspGWI	ACGGA	4 cut(s)	399, 607, 725, 770
TspRI	CASTG	2 cut(s)	256, 532
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	2 cut(s)	5, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.