Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Reverse (-)

16303893 .. 16305036

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTACGAGCTGGTGAACAACAGGTCAGATAAGGTTGAGGATACCAATTTTGAAGCAGCAACACAACCAATCTTCAATTCATTGCCTTCCATAGCTTCTTACTTAGAATTTGAACACAACCTGTCATCACAGTCGCCTCAACTTCAAACCCCAATTGATTGGCCTCTTGATGGCAAGCTCACCCTCAACTGGGTCCAAAGCCTCATGTCCGTCTTCGACTGGGCATCTAGAAATCTTGAGCCGACCCAATTGCCAAACGTGTTTCTTGTTGAGGTTTTTGATAGCCTGGCCCTATTTAACTCCAAGATCCTCCACAAAAAGGCCAATTGCGTCACTATTAACAACTTAGCCCTTGAATCCACGGTCGTTGTCGTCGGAGACCTTCATGGGCAGTTGCATGACCTTTTTTTCCTTCTCCATGATGCTGGCTTTCCCTCAGAAAATCGATTCTTCGTCTTCAATGGCGATTATGTTGACAGAGGTGCTTGGGGTCTTGAAAGTTTCTTAATTTTGTTAGCTTGGAAAGTGCTCATGCCAAAGAGGGTGTATCTATTGCGAGGAAACCACGAATCAAAGTATTGCACTTCTGTTTATGGTTTTGAGAAGGAAGTGCTGACAAAATACAATGATAGAGGCAAACACGTGTATTGTAAATGTCTTGGGTGCTTTGAAGGTCCCAATGTGATTCCTGGTGATGTGCTGTGGTCGGATCCCTCAATATCTCCCGGCCTGTCTCCAAATATAGAGAGAGGCATTGGGCTGCTTTGGGGTCCTGATTGCACCGAGGATTTTCTCAAGAATTGTCAACTCAAATTGATTATTAGATCCCACGAAGGTCCTGATGCACGAGAAAATAGGCCAGGTCTTGGTGGAATGGATGAAGGGTACACCATCGATCACATTGTGGAGTCAGGAAAGCTCATCACTTTGTTTAGTGCTCCAGATTACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

318

Amino Acids

35.75

Weight (kDa)

5.04

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	866
AclWI	GGATC	4 cut(s)	301, 704, 717, 819
AcsI	RAATTY	1 cut(s)	107
AcvI	CACGTG	1 cut(s)	643
AdeI	CACNNNGTG	1 cut(s)	904
AfaI	GTAC	2 cut(s)	5, 887
AfiI	CCNNNNNNNGG	5 cut(s)	170, 189, 190, 319, 866
AflIII	ACRYGT	3 cut(s)	258, 640, 642
AgsI	TTSAA	8 cut(s)	53, 76, 113, 146, 356, 460, 497, 671
AjnI	CCWGG	3 cut(s)	285, 688, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	5 cut(s)	10, 95, 178, 518, 919
AluI	AGCT	5 cut(s)	10, 95, 178, 518, 919
Alw21I	GWGCWC	2 cut(s)	531, 940
Alw26I	GTCTC	2 cut(s)	372, 738
AlwI	GGATC	4 cut(s)	301, 704, 717, 819
AoxI	GGCC	5 cut(s)	161, 288, 321, 727, 857
ApeKI	GCWGC	2 cut(s)	56, 760
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	5 cut(s)	193, 289, 674, 770, 836
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	3 cut(s)	25, 172, 704
AvaII	GGWCC	4 cut(s)	193, 674, 770, 836
BamHI	GGATCC	1 cut(s)	709
BauI	CACGAG	1 cut(s)	846
BbrPI	CACGTG	1 cut(s)	643
BbsI	GAAGAC	2 cut(s)	205, 448
Bbv12I	GWGCWC	2 cut(s)	531, 940
BbvI	GCAGC	2 cut(s)	68, 747
BccI	CCATC	2 cut(s)	164, 899
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	3 cut(s)	287, 690, 861
BciVI	GTATCC	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	372, 738
BfaI	CTAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	57, 761
BlsI	GCNGC	2 cut(s)	58, 762
Bme1390I	CCNGG	4 cut(s)	287, 690, 726, 861
Bme18I	GGWCC	4 cut(s)	193, 674, 770, 836
BmgT120I	GGNCC	5 cut(s)	193, 289, 674, 770, 836
BmiI	GGNNCC	4 cut(s)	194, 676, 711, 771
BmrFI	CCNGG	4 cut(s)	287, 690, 726, 861
BmrI	ACTGGG	2 cut(s)	199, 229
BmsI	GCATC	3 cut(s)	233, 412, 832
BmuI	ACTGGG	2 cut(s)	199, 229
BpiI	GAAGAC	2 cut(s)	205, 448
BpmI	CTGGAG	1 cut(s)	924
BpuEI	CTTGAG	2 cut(s)	257, 779
BpuMI	CCSGG	1 cut(s)	726
Bsa29I	ATCGAT	2 cut(s)	445, 894
BsaAI	YACGTR	1 cut(s)	643
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	360, 783
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 189, 190, 319, 866
Bse1I	ACTGG	2 cut(s)	194, 224
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	3 cut(s)	287, 690, 861
BseCI	ATCGAT	2 cut(s)	445, 894
BseDI	CCNNGG	2 cut(s)	360, 783
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	5 cut(s)	170, 189, 190, 319, 866
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	194, 224
BseXI	GCAGC	2 cut(s)	68, 747
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	5 cut(s)	163, 290, 323, 729, 859
BshVI	ATCGAT	2 cut(s)	445, 894
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	531, 940
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	5 cut(s)	170, 189, 190, 319, 866
BsmAI	GTCTC	2 cut(s)	372, 738
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	5 cut(s)	163, 290, 323, 729, 859
Bso31I	GGTCTC	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	531, 940
Bsp143I	GATC	4 cut(s)	306, 709, 824, 895
BspANI	GGCC	5 cut(s)	163, 290, 323, 729, 859
BspCNI	CTCAG	1 cut(s)	449
BspDI	ATCGAT	2 cut(s)	445, 894
BspLI	GGNNCC	4 cut(s)	194, 676, 711, 771
BspPI	GGATC	4 cut(s)	301, 704, 717, 819
BspTNI	GGTCTC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	194, 224
BssECI	CCNNGG	2 cut(s)	360, 783
BssMI	GATC	4 cut(s)	306, 709, 824, 895
BssSI	CACGAG	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	3 cut(s)	287, 690, 861
Bst4CI	ACNGT	2 cut(s)	132, 364
BstBAI	YACGTR	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	176, 427
BstDEI	CTNAG	3 cut(s)	103, 346, 436
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	883
BstKTI	GATC	4 cut(s)	309, 712, 827, 898
BstMAI	GTCTC	2 cut(s)	372, 738
BstMBI	GATC	4 cut(s)	306, 709, 824, 895
BstMCI	CGRYCG	1 cut(s)	366
BstNI	CCWGG	3 cut(s)	287, 690, 861
BstSCI	CCNGG	4 cut(s)	285, 688, 724, 859
BstV1I	GCAGC	2 cut(s)	68, 747
BstV2I	GAAGAC	2 cut(s)	205, 448
BstX2I	RGATCY	3 cut(s)	306, 709, 824
BstXI	CCANNNNNNTGG	2 cut(s)	159, 425
BstYI	RGATCY	3 cut(s)	306, 709, 824
Bsu15I	ATCGAT	2 cut(s)	445, 894
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	5 cut(s)	163, 290, 323, 729, 859
BsuTUI	ATCGAT	2 cut(s)	445, 894
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	883
Cac8I	GCNNGC	2 cut(s)	176, 427
Cfr13I	GGNCC	5 cut(s)	193, 289, 674, 770, 836
ClaI	ATCGAT	2 cut(s)	445, 894
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	4, 886
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	5 cut(s)	205, 386, 398, 419, 532
CviQI	GTAC	2 cut(s)	4, 886
DdeI	CTNAG	3 cut(s)	103, 346, 436
DpnI	GATC	4 cut(s)	308, 711, 826, 897
DpnII	GATC	4 cut(s)	306, 709, 824, 895
DraIII	CACNNNGTG	1 cut(s)	904
Eco31I	GGTCTC	1 cut(s)	372
Eco47I	GGWCC	4 cut(s)	193, 674, 770, 836
Eco72I	CACGTG	1 cut(s)	643
EcoO109I	RGGNCCY	3 cut(s)	674, 770, 836
EcoRII	CCWGG	3 cut(s)	285, 688, 859
FaeI	CATG	5 cut(s)	208, 389, 401, 422, 535
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	5 cut(s)	204, 385, 397, 418, 531
Fnu4HI	GCNGC	2 cut(s)	57, 761
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	2 cut(s)	57, 761
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	57, 761
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	5 cut(s)	163, 290, 323, 729, 859
HapII	CCGG	1 cut(s)	726
HgaI	GACGC	1 cut(s)	319
Hin1II	CATG	5 cut(s)	208, 389, 401, 422, 535
HincII	GTYRAC	2 cut(s)	475, 806
HindII	GTYRAC	2 cut(s)	475, 806
HinfI	GANTC	5 cut(s)	356, 447, 569, 685, 908
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	3 cut(s)	25, 172, 704
Hpy166II	GTNNAC	4 cut(s)	16, 475, 806, 888
Hpy188I	TCNGA	4 cut(s)	28, 377, 439, 709
Hpy188III	TCNNGA	9 cut(s)	167, 228, 236, 494, 773, 796, 839, 912, 941
Hpy8I	GTNNAC	4 cut(s)	16, 475, 806, 888
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	7 cut(s)	96, 392, 422, 598, 665, 827, 875
HpyCH4III	ACNGT	2 cut(s)	132, 364
HpyCH4IV	ACGT	2 cut(s)	258, 642
HpyCH4V	TGCA	4 cut(s)	397, 582, 780, 845
HpyF3I	CTNAG	3 cut(s)	103, 346, 436
HpySE526I	ACGT	2 cut(s)	258, 642
Hsp92II	CATG	5 cut(s)	208, 389, 401, 422, 535
Kzo9I	GATC	4 cut(s)	306, 709, 824, 895
LmnI	GCTCC	1 cut(s)	943
Lsp1109I	GCAGC	2 cut(s)	68, 747
LweI	GCATC	3 cut(s)	233, 412, 832
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	258, 642
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	4 cut(s)	308, 711, 826, 897
MboI	GATC	4 cut(s)	306, 709, 824, 895
MboII	GAAGA	4 cut(s)	64, 205, 442, 448
MfeI	CAATTG	3 cut(s)	153, 248, 325
MflI	RGATCY	3 cut(s)	306, 709, 824
MhlI	GDGCHC	2 cut(s)	531, 940
MluCI	AATT	9 cut(s)	46, 76, 107, 153, 248, 325, 507, 799, 812
MlyI	GAGTC	1 cut(s)	917
MmeI	TCCRAC	2 cut(s)	355, 687
MseI	TTAA	3 cut(s)	297, 339, 506
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	4 cut(s)	287, 690, 726, 861
MunI	CAATTG	3 cut(s)	153, 248, 325
MvaI	CCWGG	3 cut(s)	287, 690, 861
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	4 cut(s)	306, 709, 824, 895
NlaIII	CATG	5 cut(s)	208, 389, 401, 422, 535
NlaIV	GGNNCC	4 cut(s)	194, 676, 711, 771
NmuCI	GTSAC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	356, 447, 569, 685
PflMI	CCANNNNNTGG	1 cut(s)	866
PkrI	GCNGC	2 cut(s)	58, 762
PleI	GAGTC	1 cut(s)	916
PmaCI	CACGTG	1 cut(s)	643
PmlI	CACGTG	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	916
Ppu21I	YACGTR	1 cut(s)	643
PpuMI	RGGWCCY	3 cut(s)	674, 770, 836
Psp5II	RGGWCCY	3 cut(s)	674, 770, 836
Psp6I	CCWGG	3 cut(s)	285, 688, 859
PspCI	CACGTG	1 cut(s)	643
PspGI	CCWGG	3 cut(s)	285, 688, 859
PspN4I	GGNNCC	4 cut(s)	194, 676, 711, 771
PspPI	GGNCC	5 cut(s)	193, 289, 674, 770, 836
PspPPI	RGGWCCY	3 cut(s)	674, 770, 836
PsuI	RGATCY	3 cut(s)	306, 709, 824
RsaI	GTAC	2 cut(s)	5, 887
RsaNI	GTAC	2 cut(s)	4, 886
SaqAI	TTAA	3 cut(s)	297, 339, 506
SatI	GCNGC	2 cut(s)	57, 761
Sau3AI	GATC	4 cut(s)	306, 709, 824, 895
Sau96I	GGNCC	5 cut(s)	193, 289, 674, 770, 836
SchI	GAGTC	1 cut(s)	917
ScrFI	CCNGG	4 cut(s)	287, 690, 726, 861
SduI	GDGCHC	2 cut(s)	531, 940
SfaNI	GCATC	3 cut(s)	233, 412, 832
SinI	GGWCC	4 cut(s)	193, 674, 770, 836
SmlI	CTYRAG	2 cut(s)	236, 794
SmoI	CTYRAG	2 cut(s)	236, 794
Sse9I	AATT	9 cut(s)	46, 76, 107, 153, 248, 325, 507, 799, 812
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	285, 688, 724, 859
TaaI	ACNGT	2 cut(s)	132, 364
TaiI	ACGT	2 cut(s)	261, 645
TaqI	TCGA	3 cut(s)	216, 445, 894
TasI	AATT	9 cut(s)	46, 76, 107, 153, 248, 325, 507, 799, 812
TfiI	GAWTC	4 cut(s)	356, 447, 569, 685
Tru1I	TTAA	3 cut(s)	297, 339, 506
Tru9I	TTAA	3 cut(s)	297, 339, 506
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	56, 760
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	69, 374, 894
TspGWI	ACGGA	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	4 cut(s)	193, 674, 770, 836
XapI	RAATTY	1 cut(s)	107
XbaI	TCTAGA	1 cut(s)	227
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.