Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

83344567 .. 83348188

Gene Structure 3622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTTTGGCAGAATCATCGAGGGGCAGACATGTCATGCAACTGCGATATCGAAATTGCAGCTCTTCTTCCGCCTGAATCTGAATCTGAATCTGACCCATCTCACTGTAATCCTCCGCTACCCACATCCCAACATCAAGAACAATCTTTATCTCCAAACCAAGTCCCGGAAGTTGCAGAACCAGCGATCCTGGGATCATCGTCGCCGCCGCCGCCGGAGCTAGACTTCCCAATCGAATGGCCCCCCGACGGGAAGCTCAGCCTGGACTGGGTCCAGAACCTCATGTCCGTCTTCGATTGGTCTTCAAGAAATCTAACACCAACCCAATTCCCGGAGGTTCTTCCCGTCCGGGTTTTCGATTCCTTGGTTCTTTGCGCCTCCAAGATTCTCCACAAAGAACCCAATTGCGTCAAGATCGATGACTGCGGCCCTGACTCCACCGTCGTCGTCGTCGGAGACGTCCACGGCCAGTTGCACGACGTTCTTTTTCTTCTGAAGGATGCTGGGTACCCTTCGGAGAATCGAGTCTTCGTCTTCAATGGGGATTATGTTGACAGAGGAGCTTGGGGTCTTGAGACTTTCTTGATTTTACTGGCTTGGAAAGTGTTGATGCCGAAAAGCGTTTATCTTTTGAGAGGTAACCACGAATCCAAGTACTGTACTTCTGTTTATGGGTTTGAGAAGGAAGTGCTAGTCAAGTATAGAGATGAGGATGGTAAAGATAAAGTAGGTAAACATGTGTATAGAAAATGCCTGGGATGCTTTGAAGGGCTTCCTCTTGCGTCCATTATAAATGGCCATGTATATACTGCTCATGGAGGGCTGTTTAGGAGCATTGCAGTGACACCAGCTAAGAGGGAAAGGGAAAGAAGAATCGAAAGATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

296

Amino Acids

33.2

Weight (kDa)

5.38

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	147 - 276	5e-24	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AasI	GACNNNNNNGTC	1 cut(s)	440
AatII	GACGTC	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	507
AciI	CCGC	6 cut(s)	71, 116, 206, 209, 212, 426
AclWI	GGATC	2 cut(s)	181, 202
AcoI	YGGCCR	2 cut(s)	466, 796
AcuI	CTGAAG	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	3 cut(s)	509, 656, 661
AfiI	CCNNNNNNNGG	5 cut(s)	166, 248, 249, 268, 331
AflIII	ACRYGT	2 cut(s)	30, 736
AgsI	TTSAA	3 cut(s)	306, 538, 767
AjnI	CCWGG	3 cut(s)	189, 261, 753
AloI	GAACNNNNNNTCC	4 cut(s)	171, 203, 269, 301
AluBI	AGCT	5 cut(s)	62, 220, 256, 563, 851
AluI	AGCT	5 cut(s)	62, 220, 256, 563, 851
Alw26I	GTCTC	2 cut(s)	450, 569
AlwI	GGATC	2 cut(s)	181, 202
AoxI	GGCC	4 cut(s)	239, 427, 466, 796
ApeKI	GCWGC	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	771
Asp718I	GGTACC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	240, 271, 428
AsuC2I	CCSGG	3 cut(s)	167, 332, 350
AvaII	GGWCC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	507
BbsI	GAAGAC	4 cut(s)	283, 294, 520, 526
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	106, 707
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	191, 263, 755
BcnI	CCSGG	3 cut(s)	167, 332, 350
BcoDI	GTCTC	2 cut(s)	450, 569
BfaI	CTAG	2 cut(s)	221, 692
BisI	GCNGC	5 cut(s)	60, 206, 209, 212, 427
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	5 cut(s)	61, 207, 210, 213, 428
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	6 cut(s)	167, 191, 263, 332, 350, 755
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	240, 271, 428
BmiI	GGNNCC	3 cut(s)	242, 272, 509
BmrFI	CCNGG	6 cut(s)	167, 191, 263, 332, 350, 755
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	490, 600, 749
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	4 cut(s)	283, 294, 520, 526
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	3 cut(s)	167, 332, 350
Bsa29I	ATCGAT	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	190, 363, 463, 754
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 248, 249, 268, 331
Bse1I	ACTGG	3 cut(s)	272, 469, 597
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	3 cut(s)	191, 263, 755
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	190, 363, 463, 754
BseGI	GGATG	4 cut(s)	125, 505, 718, 764
BseLI	CCNNNNNNNGG	5 cut(s)	166, 248, 249, 268, 331
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	3 cut(s)	272, 469, 597
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	4 cut(s)	241, 429, 468, 798
BshNI	GGYRCC	1 cut(s)	507
BshVI	ATCGAT	1 cut(s)	417
BsiSI	CCGG	4 cut(s)	167, 215, 332, 349
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	5 cut(s)	166, 248, 249, 268, 331
BsmAI	GTCTC	2 cut(s)	450, 569
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	241, 429, 468, 798
Bsp143I	GATC	3 cut(s)	186, 194, 414
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	6 cut(s)	71, 116, 206, 209, 212, 426
BspANI	GGCC	4 cut(s)	241, 429, 468, 798
BspCNI	CTCAG	1 cut(s)	270
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	242, 272, 509
BspPI	GGATC	2 cut(s)	181, 202
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	834
BsrI	ACTGG	3 cut(s)	272, 469, 597
BssECI	CCNNGG	4 cut(s)	190, 363, 463, 754
BssMI	GATC	3 cut(s)	186, 194, 414
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	3 cut(s)	191, 263, 755
Bst4CI	ACNGT	3 cut(s)	107, 442, 659
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	257, 852
BstDSI	CCRYGG	1 cut(s)	463
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	4 cut(s)	125, 505, 718, 764
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	3 cut(s)	189, 197, 417
BstMAI	GTCTC	2 cut(s)	450, 569
BstMBI	GATC	3 cut(s)	186, 194, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 211, 217, 759
BstNI	CCWGG	3 cut(s)	191, 263, 755
BstNSI	RCATGY	2 cut(s)	34, 740
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	6 cut(s)	165, 189, 261, 330, 348, 753
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	4 cut(s)	283, 294, 520, 526
BstXI	CCANNNNNNTGG	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	241, 429, 468, 798
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	4 cut(s)	125, 505, 718, 764
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	2 cut(s)	103, 846
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	240, 271, 428
ClaI	ATCGAT	1 cut(s)	417
CseI	GACGC	2 cut(s)	397, 771
Csp6I	GTAC	3 cut(s)	508, 655, 660
CviAII	CATG	6 cut(s)	31, 36, 283, 737, 800, 815
CviQI	GTAC	3 cut(s)	508, 655, 660
DdeI	CTNAG	2 cut(s)	257, 852
DpnI	GATC	3 cut(s)	188, 196, 416
DpnII	GATC	3 cut(s)	186, 194, 414
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	2 cut(s)	466, 796
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	638
EcoRII	CCWGG	3 cut(s)	189, 261, 753
EcoRV	GATATC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	6 cut(s)	34, 39, 286, 740, 803, 818
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	6 cut(s)	30, 35, 282, 736, 799, 814
Fnu4HI	GCNGC	5 cut(s)	60, 206, 209, 212, 427
FokI	GGATG	4 cut(s)	112, 512, 725, 771
Fsp4HI	GCNGC	5 cut(s)	60, 206, 209, 212, 427
FspBI	CTAG	2 cut(s)	221, 692
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	5 cut(s)	60, 206, 209, 212, 427
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	4 cut(s)	241, 429, 468, 798
HapII	CCGG	4 cut(s)	167, 215, 332, 349
HgaI	GACGC	2 cut(s)	397, 771
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	6 cut(s)	34, 39, 286, 740, 803, 818
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HpaII	CCGG	4 cut(s)	167, 215, 332, 349
Hpy166II	GTNNAC	3 cut(s)	463, 553, 734
Hpy188I	TCNGA	6 cut(s)	82, 88, 94, 455, 495, 517
Hpy188III	TCNNGA	6 cut(s)	137, 274, 306, 412, 572, 583
Hpy8I	GTNNAC	3 cut(s)	463, 553, 734
Hpy99I	CGWCG	7 cut(s)	205, 251, 446, 449, 452, 455, 482
HpyAV	CCTTC	4 cut(s)	490, 522, 676, 761
HpyCH4III	ACNGT	3 cut(s)	107, 442, 659
HpyCH4IV	ACGT	2 cut(s)	459, 480
HpyCH4V	TGCA	5 cut(s)	39, 59, 176, 475, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 211, 217, 759
HpyF3I	CTNAG	2 cut(s)	257, 852
HpySE526I	ACGT	2 cut(s)	459, 480
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	6 cut(s)	34, 39, 286, 740, 803, 818
HspAI	GCGC	1 cut(s)	375
KpnI	GGTACC	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	186, 194, 414
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	3 cut(s)	217, 560, 831
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	3 cut(s)	490, 600, 749
MaeI	CTAG	2 cut(s)	221, 692
MaeII	ACGT	2 cut(s)	459, 480
MaeIII	GTNAC	2 cut(s)	638, 841
MalI	GATC	3 cut(s)	188, 196, 416
MboI	GATC	3 cut(s)	186, 194, 414
MboII	GAAGA	9 cut(s)	56, 59, 283, 294, 332, 482, 520, 526, 882
MfeI	CAATTG	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	3 cut(s)	54, 326, 403
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	2 cut(s)	428, 534
MmeI	TCCRAC	1 cut(s)	433
Mox20I	TGGCCA	1 cut(s)	798
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	798
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	798
MspI	CCGG	4 cut(s)	167, 215, 332, 349
MspR9I	CCNGG	6 cut(s)	167, 191, 263, 332, 350, 755
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	3 cut(s)	191, 263, 755
MwoI	GCNNNNNNNGC	4 cut(s)	182, 211, 217, 759
NciI	CCSGG	3 cut(s)	167, 332, 350
NdeII	GATC	3 cut(s)	186, 194, 414
NlaIII	CATG	6 cut(s)	34, 39, 286, 740, 803, 818
NlaIV	GGNNCC	3 cut(s)	242, 272, 509
NmuCI	GTSAC	1 cut(s)	841
NspI	RCATGY	2 cut(s)	34, 740
PciI	ACATGT	2 cut(s)	30, 736
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	9 cut(s)	13, 77, 83, 89, 359, 385, 520, 647, 873
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	2 cut(s)	165, 330
PkrI	GCNGC	5 cut(s)	61, 207, 210, 213, 428
PleI	GAGTC	2 cut(s)	428, 533
PpsI	GAGTC	2 cut(s)	428, 533
PscI	ACATGT	2 cut(s)	30, 736
PsiI	TTATAA	1 cut(s)	791
Psp6I	CCWGG	3 cut(s)	189, 261, 753
PspEI	GGTNACC	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	3 cut(s)	189, 261, 753
PspN4I	GGNNCC	3 cut(s)	242, 272, 509
PspPI	GGNCC	3 cut(s)	240, 271, 428
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	509, 656, 661
RsaNI	GTAC	3 cut(s)	508, 655, 660
RseI	CAYNNNNRTG	1 cut(s)	839
SapI	GCTCTTC	1 cut(s)	69
SatI	GCNGC	5 cut(s)	60, 206, 209, 212, 427
Sau3AI	GATC	3 cut(s)	186, 194, 414
Sau96I	GGNCC	3 cut(s)	240, 271, 428
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	2 cut(s)	428, 534
ScrFI	CCNGG	6 cut(s)	167, 191, 263, 332, 350, 755
SfaNI	GCATC	3 cut(s)	490, 600, 749
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	3 cut(s)	54, 326, 403
SsiI	CCGC	6 cut(s)	71, 116, 206, 209, 212, 426
SspMI	CTAG	2 cut(s)	221, 692
StyD4I	CCNGG	6 cut(s)	165, 189, 261, 330, 348, 753
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	107, 442, 659
TaiI	ACGT	2 cut(s)	462, 483
TaqI	TCGA	8 cut(s)	19, 51, 234, 294, 357, 417, 523, 876
TasI	AATT	3 cut(s)	54, 326, 403
TatI	WGTACW	2 cut(s)	654, 659
TauI	GCSGC	4 cut(s)	208, 211, 214, 429
TfiI	GAWTC	9 cut(s)	13, 77, 83, 89, 359, 385, 520, 647, 873
TscAI	CASTG	2 cut(s)	110, 846
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	841
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	110, 846
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	271
XceI	RCATGY	2 cut(s)	34, 740
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	2 cut(s)	221, 692
ZraI	GACGTC	1 cut(s)	460
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.