Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

2604822 .. 2605277

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCCGTCTTCGATTGGTCTTCAAGAAATCTAACACCAACCCAATTCCCGGAGGTTCTTCCCGTCCGGGTTTTCGATTCCTTGGCTCTTTGCGCCTCCATGATTCTCCACAAAGAACCCAATTGCGTCAAGATCGACGACTGCGGCCCTGACTCCACCGTCGTCGTCGTCGGAGACGTCCACGGCCAGTTGCACGACGTTCTTTTTCTTCTGAAGGATGCTGGGTACCCTTCGGAGAATCGAGTCTTCGTCTTCAATGGGGATTATGTTGACAGAGGAGCTTGGGGTCTTGAGACTTTCTTGATTTTACTGGCTTGGAAAGTGTTGATGCCGAAAAGTGTTTATCTTTTAAGAGGTAACCATGAATCCAAGTACTGTACTTCTGTTTATGGGTTTGAGAAGGAAGTGCTAGTCAAGTATAGAGATGACGATGGTAAAGATAAAGTAGCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

151

Amino Acids

17.1

Weight (kDa)

5.51

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	53 - 141	1.1e-16	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	180
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	227, 374, 379
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	24, 256
AluBI	AGCT	2 cut(s)	281, 449
AluI	AGCT	2 cut(s)	281, 449
Alw26I	GTCTC	2 cut(s)	168, 287
AoxI	GGCC	2 cut(s)	145, 184
Asp718I	GGTACC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	2 cut(s)	50, 68
BanI	GGYRCC	1 cut(s)	225
BbsI	GAAGAC	3 cut(s)	12, 238, 244
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	50, 68
BcoDI	GTCTC	2 cut(s)	168, 287
BfaI	CTAG	2 cut(s)	410, 450
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	50, 68
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	50, 68
BmsI	GCATC	2 cut(s)	208, 318
BpiI	GAAGAC	3 cut(s)	12, 238, 244
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	2 cut(s)	50, 68
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	81, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	187, 315
BseDI	CCNNGG	2 cut(s)	81, 181
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	187, 315
BseRI	GAGGAG	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	2 cut(s)	147, 186
BshNI	GGYRCC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	50, 67
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	168, 287
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	147, 186
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	147, 186
BspLI	GGNNCC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	187, 315
BssECI	CCNNGG	2 cut(s)	81, 181
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	160, 377
BstACI	GRCGYC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	181
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	2 cut(s)	168, 287
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	48, 66
BstV2I	GAAGAC	3 cut(s)	12, 238, 244
BsuRI	GGCC	2 cut(s)	147, 186
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	226, 373, 378
CviAII	CATG	2 cut(s)	100, 362
CviJI	RGCY	6 cut(s)	86, 147, 186, 281, 314, 449
CviKI_1	RGCY	6 cut(s)	86, 147, 186, 281, 314, 449
CviQI	GTAC	3 cut(s)	226, 373, 378
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	2 cut(s)	103, 365
FaiI	YATR	5 cut(s)	101, 267, 363, 390, 420
FatI	CATG	2 cut(s)	99, 361
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	410, 450
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	147, 186
HapII	CCGG	2 cut(s)	50, 67
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	103, 365
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	6 cut(s)	77, 103, 152, 238, 243, 365
HpaII	CCGG	2 cut(s)	50, 67
Hpy166II	GTNNAC	2 cut(s)	181, 271
Hpy188I	TCNGA	3 cut(s)	173, 213, 235
Hpy188III	TCNNGA	4 cut(s)	24, 130, 290, 301
Hpy8I	GTNNAC	2 cut(s)	181, 271
Hpy99I	CGWCG	6 cut(s)	140, 164, 167, 170, 173, 200
HpyAV	CCTTC	3 cut(s)	208, 240, 394
HpyCH4III	ACNGT	2 cut(s)	160, 377
HpyCH4IV	ACGT	2 cut(s)	177, 198
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	177, 198
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	103, 365
HspAI	GCGC	1 cut(s)	93
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	6 cut(s)	63, 80, 162, 200, 207, 296
LweI	GCATC	2 cut(s)	208, 318
MaeI	CTAG	2 cut(s)	410, 450
MaeII	ACGT	2 cut(s)	177, 198
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	5 cut(s)	12, 50, 200, 238, 244
MfeI	CAATTG	1 cut(s)	121
MluCI	AATT	2 cut(s)	44, 121
MlyI	GAGTC	2 cut(s)	146, 252
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	46, 106, 269, 347
MseI	TTAA	1 cut(s)	350
MspI	CCGG	2 cut(s)	50, 67
MspR9I	CCNGG	2 cut(s)	50, 68
MunI	CAATTG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	50, 68
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	103, 365
NlaIV	GGNNCC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	4 cut(s)	77, 103, 238, 365
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	2 cut(s)	146, 251
PpsI	GAGTC	2 cut(s)	146, 251
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	227, 374, 379
RsaNI	GTAC	3 cut(s)	226, 373, 378
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	2 cut(s)	146, 252
ScrFI	CCNGG	2 cut(s)	50, 68
SetI	ASST	7 cut(s)	57, 180, 201, 283, 358, 451, 455
SfaNI	GCATC	2 cut(s)	208, 318
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	44, 121
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	2 cut(s)	410, 450
StyD4I	CCNGG	2 cut(s)	48, 66
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	160, 377
TaiI	ACGT	2 cut(s)	180, 201
TaqI	TCGA	4 cut(s)	12, 75, 135, 241
TasI	AATT	2 cut(s)	44, 121
TatI	WGTACW	2 cut(s)	372, 377
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	4 cut(s)	77, 103, 238, 365
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	378
XspI	CTAG	2 cut(s)	410, 450
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.