Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

67602065 .. 67603338

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGGAAAAGTTAAAGTTTCACAATCAAAGAGTTCTTCCCGTCCGGGTTTTCGACTCCTTGGTTCTTTGCGCCTCCAATGTTCTCCACAAAGAACCCAATTGCATCAAGATCAACGACTGTGGCCCTGACTCCACCGTCGTCGTCGTCGTCGTCGGAGACGTCCACGGCCAGTTGCACGACGTTCTTTTTCTTCTGAAGGATGCTAGGTACCCTTCGGAGAATCGAGTCTTCGTCTTCAATGGGGATTATGTTGACAGAGGAGCTTGGGGTCTTGAGACTTTCTTGATTTTACTGGCTTGGAAAGTCTTGATGCCGAAAAGCGTTTATCTTGTGAAAGGTAACCATGAATCCAAGTACTGTACTTCTGTTTATGGGTTTGAGAAGGAAGTGCTAGTCAAGTATAGAGACGATGATGGTAAAGATAAAGTAGTGACACCAGCTAAGAGGGGAAAGGGAAAGAAGAAAGGAAAGATTGTTTTGATTTCGGAGACTAGTACTTTGGATTGGATCGAAATTTTCATCGGCCAGTCCGACTCGCACCGCGTCTGGCTCGCGGCGGTATCGCTGTCCAAGAAGGTTTCGGCAGCCTTGTCTGGTAATGGAAGCTCTCCGAAGTCGTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

210

Amino Acids

23.35

Weight (kDa)

9.16

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	49 - 158	6.3e-17	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AatII	GACGTC	1 cut(s)	165
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccII	CGCG	2 cut(s)	546, 557
AciI	CCGC	3 cut(s)	544, 557, 560
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	2 cut(s)	169, 526
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	4 cut(s)	212, 359, 364, 499
AgsI	TTSAA	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	494
AluBI	AGCT	3 cut(s)	266, 443, 609
AluI	AGCT	3 cut(s)	266, 443, 609
Alw26I	GTCTC	4 cut(s)	153, 272, 402, 485
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	3 cut(s)	124, 169, 526
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	1 cut(s)	516
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
Asp700I	GAANNNNTTC	1 cut(s)	620
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	223, 229
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	4 cut(s)	153, 272, 402, 485
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	3 cut(s)	207, 395, 495
BisI	GCNGC	2 cut(s)	558, 588
BlsI	GCNGC	2 cut(s)	559, 589
BmcAI	AGTACT	2 cut(s)	359, 499
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	3 cut(s)	114, 193, 303
BpiI	GAAGAC	2 cut(s)	223, 229
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	60, 166
Bse1I	ACTGG	3 cut(s)	172, 300, 529
BseDI	CCNNGG	2 cut(s)	60, 166
BseGI	GGATG	1 cut(s)	208
BseNI	ACTGG	3 cut(s)	172, 300, 529
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	599
Bsh1236I	CGCG	2 cut(s)	546, 557
BshFI	GGCC	3 cut(s)	126, 171, 528
BshNI	GGYRCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	46
BsmAI	GTCTC	4 cut(s)	153, 272, 402, 485
BsmBI	CGTCTC	2 cut(s)	153, 402
BsnI	GGCC	3 cut(s)	126, 171, 528
Bsp143I	GATC	2 cut(s)	111, 510
BspACI	CCGC	3 cut(s)	544, 557, 560
BspANI	GGCC	3 cut(s)	126, 171, 528
BspFNI	CGCG	2 cut(s)	546, 557
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	172, 300, 529
BssECI	CCNNGG	2 cut(s)	60, 166
BssMI	GATC	2 cut(s)	111, 510
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	122, 139, 362
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	546, 557
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	114, 513
BstMAI	GTCTC	4 cut(s)	153, 272, 402, 485
BstMBI	GATC	2 cut(s)	111, 510
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	2 cut(s)	546, 557
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	2 cut(s)	223, 229
BsuRI	GGCC	3 cut(s)	126, 171, 528
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	4 cut(s)	211, 358, 363, 498
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	9 cut(s)	126, 171, 266, 299, 443, 528, 553, 590, 609
CviKI_1	RGCY	9 cut(s)	126, 171, 266, 299, 443, 528, 553, 590, 609
CviQI	GTAC	4 cut(s)	211, 358, 363, 498
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	2 cut(s)	113, 512
DpnII	GATC	2 cut(s)	111, 510
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	169, 526
Eco130I	CCWWGG	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	2 cut(s)	153, 402
FaeI	CATG	1 cut(s)	350
FaiI	YATR	4 cut(s)	252, 348, 375, 405
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	558, 588
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	558, 588
FspBI	CTAG	3 cut(s)	207, 395, 495
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	558, 588
HaeIII	GGCC	3 cut(s)	126, 171, 528
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	6 cut(s)	56, 131, 223, 228, 350, 536
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	166, 256
Hpy188I	TCNGA	6 cut(s)	158, 198, 220, 490, 535, 615
Hpy188III	TCNNGA	4 cut(s)	109, 275, 286, 310
Hpy8I	GTNNAC	2 cut(s)	166, 256
Hpy99I	CGWCG	7 cut(s)	143, 146, 149, 152, 155, 158, 185
HpyAV	CCTTC	4 cut(s)	193, 225, 379, 571
HpyCH4III	ACNGT	3 cut(s)	122, 139, 362
HpyCH4IV	ACGT	2 cut(s)	162, 183
HpyCH4V	TGCA	2 cut(s)	105, 178
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	2 cut(s)	162, 183
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	111, 510
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	8 cut(s)	59, 141, 185, 281, 453, 535, 542, 582
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	3 cut(s)	114, 193, 303
MaeI	CTAG	3 cut(s)	207, 395, 495
MaeII	ACGT	2 cut(s)	162, 183
MaeIII	GTNAC	2 cut(s)	341, 433
MalI	GATC	2 cut(s)	113, 512
MboI	GATC	2 cut(s)	111, 510
MboII	GAAGA	5 cut(s)	29, 185, 223, 229, 475
MfeI	CAATTG	1 cut(s)	100
MluCI	AATT	2 cut(s)	100, 516
MlyI	GAGTC	4 cut(s)	50, 125, 237, 530
MmeI	TCCRAC	2 cut(s)	136, 558
MnlI	CCTC	3 cut(s)	85, 254, 441
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	1 cut(s)	14
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	100
MvnI	CGCG	2 cut(s)	546, 557
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	111, 510
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	4 cut(s)	147, 150, 159, 531
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	223, 350
PkrI	GCNGC	2 cut(s)	559, 589
PleI	GAGTC	4 cut(s)	50, 125, 236, 530
PpsI	GAGTC	4 cut(s)	50, 125, 236, 530
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	125
RsaI	GTAC	4 cut(s)	212, 359, 364, 499
RsaNI	GTAC	4 cut(s)	211, 358, 363, 498
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	558, 588
Sau3AI	GATC	2 cut(s)	111, 510
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	2 cut(s)	359, 499
SchI	GAGTC	4 cut(s)	50, 125, 237, 530
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	8 cut(s)	165, 186, 212, 268, 343, 445, 582, 611
SfaNI	GCATC	3 cut(s)	114, 193, 303
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	2 cut(s)	100, 516
SsiI	CCGC	3 cut(s)	544, 557, 560
SspMI	CTAG	3 cut(s)	207, 395, 495
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	122, 139, 362
TaiI	ACGT	2 cut(s)	165, 186
TaqI	TCGA	4 cut(s)	54, 226, 513, 624
TasI	AATT	2 cut(s)	100, 516
TatI	WGTACW	3 cut(s)	357, 362, 497
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	223, 350
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	17, 363, 511
XapI	RAATTY	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	3 cut(s)	207, 395, 495
ZraI	GACGTC	1 cut(s)	163
ZrmI	AGTACT	2 cut(s)	359, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.