Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007075.1

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Reverse (-)

77559 .. 78350

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007075.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtcatgcaactgcgatatcgaaattgcagctcttcttccgcctgaatctgaatctgacccatctcactgtaatcctccgctacccacatcccaacatcaggaacaatctttatctccaaaccaagtcccggaagttgcagaaccagcgatcctgggatcatcgtcgccgccgccggagctagacttcccaatcgaatggccccccgacgggaatctcagcctggactgggtccagaacctcatgtccttcttcgattggtctttaagaaatctaacaccaacccaattcccgaaggttcttcccgtccgggttttctattccttggctctttgcgcctccaagattctccacaaagaacccaattgcgtcaagatcgatgactacggccctgactccaccgtcgtcgtcggagacgtccacggccagttgcacgacgttctttttcttctgaaggatgttgggtacccttcggagaatcgagtcttcgtcttcaatggggattatgttgacagaggagattggggtcttgagactttcttgattttactagcttggaaagtgttgatgccgaaaagcgtttatcttttgagaggtaaccatgaatccaagtactgtacttctgtttatgggtttgagaaggaagtgctagtcaagtatagagatgacgatggtaaagataaagtaggtaaacatgtgtatagaaaatgcctgggatgctttgaagggcttcctcttgcgtccattataaatggccatgtatatactgctcatggagggctagctgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

263

Amino Acids

29.33

Weight (kDa)

5.03

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AasI	GACNNNNNNGTC	1 cut(s)	401
AatII	GACGTC	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AciI	CCGC	4 cut(s)	41, 80, 170, 173
AclWI	GGATC	2 cut(s)	145, 166
AcoI	YGGCCR	2 cut(s)	424, 754
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	3 cut(s)	467, 614, 619
AfiI	CCNNNNNNNGG	5 cut(s)	100, 130, 209, 210, 229
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	496, 725
AjnI	CCWGG	3 cut(s)	153, 222, 711
AloI	GAACNNNNNNTCC	4 cut(s)	135, 167, 230, 262
AluBI	AGCT	4 cut(s)	32, 181, 554, 785
AluI	AGCT	4 cut(s)	32, 181, 554, 785
Alw26I	GTCTC	2 cut(s)	408, 527
AlwI	GGATC	2 cut(s)	145, 166
AoxI	GGCC	4 cut(s)	200, 388, 424, 754
ApeKI	GCWGC	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	729
Asp718I	GGTACC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	201, 232, 389
AsuC2I	CCSGG	2 cut(s)	131, 311
AsuNHI	GCTAGC	1 cut(s)	781
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	756
BanI	GGYRCC	1 cut(s)	465
BbsI	GAAGAC	2 cut(s)	478, 484
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	70, 665
BceAI	ACGGC	2 cut(s)	403, 439
BciT130I	CCWGG	3 cut(s)	155, 224, 713
BcnI	CCSGG	2 cut(s)	131, 311
BcoDI	GTCTC	2 cut(s)	408, 527
BfaI	CTAG	4 cut(s)	182, 551, 650, 782
BisI	GCNGC	3 cut(s)	30, 170, 173
BlsI	GCNGC	3 cut(s)	31, 171, 174
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	5 cut(s)	131, 155, 224, 311, 713
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	201, 232, 389
BmiI	GGNNCC	3 cut(s)	203, 233, 467
BmrFI	CCNGG	5 cut(s)	131, 155, 224, 311, 713
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	558, 707
BmtI	GCTAGC	1 cut(s)	785
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	478, 484
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	131, 311
Bsa29I	ATCGAT	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	154, 324, 421, 712
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 130, 209, 210, 229
Bse1I	ACTGG	2 cut(s)	233, 427
BseBI	CCWGG	3 cut(s)	155, 224, 713
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	154, 324, 421, 712
BseGI	GGATG	3 cut(s)	89, 463, 722
BseLI	CCNNNNNNNGG	5 cut(s)	100, 130, 209, 210, 229
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	233, 427
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	4 cut(s)	202, 390, 426, 756
BshNI	GGYRCC	1 cut(s)	465
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	131, 176, 310
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	5 cut(s)	100, 130, 209, 210, 229
BsmAI	GTCTC	2 cut(s)	408, 527
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	4 cut(s)	202, 390, 426, 756
Bsp143I	GATC	3 cut(s)	150, 158, 375
BspACI	CCGC	4 cut(s)	41, 80, 170, 173
BspANI	GGCC	4 cut(s)	202, 390, 426, 756
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	203, 233, 467
BspOI	GCTAGC	1 cut(s)	785
BspPI	GGATC	2 cut(s)	145, 166
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	233, 427
BssECI	CCNNGG	4 cut(s)	154, 324, 421, 712
BssMI	GATC	3 cut(s)	150, 158, 375
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	155, 224, 713
Bst4CI	ACNGT	3 cut(s)	71, 403, 617
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	421
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	89, 463, 722
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	153, 161, 378
BstMAI	GTCTC	2 cut(s)	408, 527
BstMBI	GATC	3 cut(s)	150, 158, 375
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 178, 335, 717
BstNI	CCWGG	3 cut(s)	155, 224, 713
BstNSI	RCATGY	1 cut(s)	698
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	5 cut(s)	129, 153, 222, 309, 711
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	478, 484
BstXI	CCANNNNNNTGG	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	202, 390, 426, 756
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	89, 463, 722
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	783
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	201, 232, 389
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	2 cut(s)	358, 729
Csp6I	GTAC	3 cut(s)	466, 613, 618
CviAII	CATG	6 cut(s)	6, 244, 602, 695, 758, 773
CviQI	GTAC	3 cut(s)	466, 613, 618
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	3 cut(s)	152, 160, 377
DpnII	GATC	3 cut(s)	150, 158, 375
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	424, 754
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	596
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	3 cut(s)	153, 222, 711
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	6 cut(s)	9, 247, 605, 698, 761, 776
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	6 cut(s)	5, 243, 601, 694, 757, 772
Fnu4HI	GCNGC	3 cut(s)	30, 170, 173
FokI	GGATG	3 cut(s)	76, 470, 729
Fsp4HI	GCNGC	3 cut(s)	30, 170, 173
FspBI	CTAG	4 cut(s)	182, 551, 650, 782
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	30, 170, 173
HaeIII	GGCC	4 cut(s)	202, 390, 426, 756
HapII	CCGG	3 cut(s)	131, 176, 310
HgaI	GACGC	2 cut(s)	358, 729
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	6 cut(s)	9, 247, 605, 698, 761, 776
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	8 cut(s)	47, 53, 214, 346, 395, 478, 483, 605
HpaII	CCGG	3 cut(s)	131, 176, 310
Hpy166II	GTNNAC	3 cut(s)	421, 511, 692
Hpy188I	TCNGA	5 cut(s)	52, 58, 413, 453, 475
Hpy188III	TCNNGA	6 cut(s)	101, 235, 292, 373, 530, 541
Hpy8I	GTNNAC	3 cut(s)	421, 511, 692
Hpy99I	CGWCG	6 cut(s)	169, 212, 407, 410, 413, 440
HpyAV	CCTTC	6 cut(s)	259, 289, 448, 480, 634, 719
HpyCH4III	ACNGT	3 cut(s)	71, 403, 617
HpyCH4IV	ACGT	2 cut(s)	417, 438
HpyCH4V	TGCA	4 cut(s)	9, 29, 140, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 178, 335, 717
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	417, 438
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	6 cut(s)	9, 247, 605, 698, 761, 776
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	150, 158, 375
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	558, 707
MaeI	CTAG	4 cut(s)	182, 551, 650, 782
MaeII	ACGT	2 cut(s)	417, 438
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	3 cut(s)	152, 160, 377
MboI	GATC	3 cut(s)	150, 158, 375
MboII	GAAGA	7 cut(s)	26, 29, 244, 293, 440, 478, 484
MfeI	CAATTG	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	3 cut(s)	24, 287, 364
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	2 cut(s)	389, 492
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	7 cut(s)	87, 251, 349, 509, 587, 744, 770
Mox20I	TGGCCA	1 cut(s)	756
MroXI	GAANNNNTTC	1 cut(s)	729
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	756
MspI	CCGG	3 cut(s)	131, 176, 310
MspR9I	CCNGG	5 cut(s)	131, 155, 224, 311, 713
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	155, 224, 713
MwoI	GCNNNNNNNGC	4 cut(s)	146, 178, 335, 717
NciI	CCSGG	2 cut(s)	131, 311
NdeII	GATC	3 cut(s)	150, 158, 375
NheI	GCTAGC	1 cut(s)	781
NlaIII	CATG	6 cut(s)	9, 247, 605, 698, 761, 776
NlaIV	GGNNCC	3 cut(s)	203, 233, 467
NspI	RCATGY	1 cut(s)	698
PciI	ACATGT	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	6 cut(s)	47, 53, 214, 346, 478, 605
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	31, 171, 174
PleI	GAGTC	2 cut(s)	389, 491
PpsI	GAGTC	2 cut(s)	389, 491
PscI	ACATGT	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	153, 222, 711
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	3 cut(s)	153, 222, 711
PspN4I	GGNNCC	3 cut(s)	203, 233, 467
PspPI	GGNCC	3 cut(s)	201, 232, 389
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	3 cut(s)	467, 614, 619
RsaNI	GTAC	3 cut(s)	466, 613, 618
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	30, 170, 173
Sau3AI	GATC	3 cut(s)	150, 158, 375
Sau96I	GGNCC	3 cut(s)	201, 232, 389
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	2 cut(s)	389, 492
ScrFI	CCNGG	5 cut(s)	131, 155, 224, 311, 713
SfaNI	GCATC	2 cut(s)	558, 707
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	3 cut(s)	24, 287, 364
SsiI	CCGC	4 cut(s)	41, 80, 170, 173
SspMI	CTAG	4 cut(s)	182, 551, 650, 782
StyD4I	CCNGG	5 cut(s)	129, 153, 222, 309, 711
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	71, 403, 617
TaiI	ACGT	2 cut(s)	420, 441
TaqI	TCGA	5 cut(s)	21, 195, 255, 378, 481
TasI	AATT	3 cut(s)	24, 287, 364
TatI	WGTACW	2 cut(s)	612, 617
TauI	GCSGC	2 cut(s)	172, 175
TfiI	GAWTC	6 cut(s)	47, 53, 214, 346, 478, 605
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	74
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	4 cut(s)	182, 551, 650, 782
ZraI	GACGTC	1 cut(s)	418
ZrmI	AGTACT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.