Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

27190952 .. 27191539

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCCCCCCGACGGGAATCTCGGCTGGATTGGGTCCGGAACCTCATGTTCGTCTTCGATTGGTCTTCAAGAAATCTAACACCAACCCAATTCCGGAGGTTCTTCCCATCGGTTTTCGATTCCTTGGCTCTTTGCTCCTCCAAGATTCTCCACAAAGAACCCAATTGCGTCAAGATCGACGACCGCGGCCCCGACTCCACCGTCGTCGTCGGAGACGTCCACGGCCGATTGCACGACGTTCTTTTTCTTCGAAGGATGCGGGTACCCTTCGGAGAATCGATGTTGATGCCGAAAAGCGTTTATCTTTTGAGAGGTAACCATGAATCCAAGTACGTACTTGTTTATGGGTTTGAGAAGGAAGTGCTAGTCAAGTATAGAGATGACGATGGTAAAGATAAAGTAGGTAAACATGTGTATAGAAAATCCCTGGGATGCTTTAAAGGGCTTCCTCTTGCGTCCATTATAAATGGCCATGTATATACTGCTCATGGAGGGCTAGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

168

Amino Acids

19.29

Weight (kDa)

9.64

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	63 - 165	1.6e-09	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	262
AccII	CGCG	1 cut(s)	186
AccIII	TCCGGA	2 cut(s)	36, 93
AciI	CCGC	3 cut(s)	184, 186, 259
AcoI	YGGCCR	2 cut(s)	223, 469
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	3 cut(s)	264, 332, 336
AfiI	CCNNNNNNNGG	3 cut(s)	12, 13, 93
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	1 cut(s)	500
AluI	AGCT	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	207
Aor13HI	TCCGGA	2 cut(s)	36, 93
AoxI	GGCC	4 cut(s)	3, 187, 223, 469
Asp718I	GGTACC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	4, 34, 188
AsuII	TTCGAA	1 cut(s)	250
AsuNHI	GCTAGC	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	262
BbsI	GAAGAC	2 cut(s)	46, 57
BccI	CCATC	2 cut(s)	115, 380
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	365, 497
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	4, 34, 188
BmiI	GGNNCC	5 cut(s)	6, 35, 41, 190, 264
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	3 cut(s)	246, 276, 422
BmtI	GCTAGC	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	46, 57
Bpu14I	TTCGAA	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	5 cut(s)	123, 184, 220, 426, 427
BsaWI	WCCGGW	2 cut(s)	36, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 13, 93
BseAI	TCCGGA	2 cut(s)	36, 93
BseBI	CCWGG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	5 cut(s)	123, 184, 220, 426, 427
BseGI	GGATG	2 cut(s)	261, 437
BseLI	CCNNNNNNNGG	3 cut(s)	12, 13, 93
BseRI	GAGGAG	1 cut(s)	127
BseX3I	CGGCCG	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	2 cut(s)	184, 226
BshFI	GGCC	4 cut(s)	5, 189, 225, 471
BshNI	GGYRCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	278
BsiEI	CGRYCG	2 cut(s)	184, 226
BsiSI	CCGG	2 cut(s)	37, 94
BslI	CCNNNNNNNGG	3 cut(s)	12, 13, 93
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	4 cut(s)	5, 189, 225, 471
Bsp119I	TTCGAA	1 cut(s)	250
Bsp13I	TCCGGA	2 cut(s)	36, 93
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	3 cut(s)	184, 186, 259
BspANI	GGCC	4 cut(s)	5, 189, 225, 471
BspDI	ATCGAT	1 cut(s)	278
BspEI	TCCGGA	2 cut(s)	36, 93
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	5 cut(s)	6, 35, 41, 190, 264
BspOI	GCTAGC	1 cut(s)	500
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	262
BssECI	CCNNGG	5 cut(s)	123, 184, 220, 426, 427
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	184, 220
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	261, 437
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	2 cut(s)	184, 226
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	413
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	426
BstSNI	TACGTA	1 cut(s)	334
BstUI	CGCG	1 cut(s)	186
BstV2I	GAAGAC	2 cut(s)	46, 57
BstZI	CGGCCG	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	5, 189, 225, 471
BsuTUI	ATCGAT	1 cut(s)	278
BtgI	CCRYGG	2 cut(s)	184, 220
BtsCI	GGATG	2 cut(s)	261, 437
Cac8I	GCNNGC	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	4, 34, 188
Cfr42I	CCGCGG	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	278
CseI	GACGC	2 cut(s)	157, 444
Csp6I	GTAC	3 cut(s)	263, 331, 335
CviAII	CATG	5 cut(s)	46, 320, 410, 473, 488
CviJI	RGCY	9 cut(s)	5, 25, 128, 189, 225, 445, 471, 496, 500
CviKI_1	RGCY	9 cut(s)	5, 25, 128, 189, 225, 445, 471, 496, 500
CviQI	GTAC	3 cut(s)	263, 331, 335
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	223, 469
EagI	CGGCCG	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	223
Eco105I	TACGTA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	34
Eco52I	CGGCCG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	5 cut(s)	49, 323, 413, 476, 491
FatI	CATG	5 cut(s)	45, 319, 409, 472, 487
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	2 cut(s)	268, 444
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	365, 497
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	5, 189, 225, 471
HapII	CCGG	2 cut(s)	37, 94
HgaI	GACGC	2 cut(s)	157, 444
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	49, 323, 413, 476, 491
HinfI	GANTC	6 cut(s)	17, 119, 145, 194, 275, 323
HpaII	CCGG	2 cut(s)	37, 94
Hpy166II	GTNNAC	2 cut(s)	220, 407
Hpy188I	TCNGA	2 cut(s)	212, 272
Hpy188III	TCNNGA	4 cut(s)	37, 69, 94, 172
Hpy8I	GTNNAC	2 cut(s)	220, 407
Hpy99I	CGWCG	6 cut(s)	15, 182, 206, 209, 212, 239
HpyAV	CCTTC	3 cut(s)	246, 277, 349
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	3 cut(s)	216, 237, 333
HpyCH4V	TGCA	1 cut(s)	232
HpySE526I	ACGT	3 cut(s)	216, 237, 333
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	5 cut(s)	49, 323, 413, 476, 491
Kpn2I	TCCGGA	2 cut(s)	36, 93
KpnI	GGTACC	1 cut(s)	266
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	5 cut(s)	11, 50, 107, 413, 440
LweI	GCATC	3 cut(s)	246, 276, 422
MaeI	CTAG	2 cut(s)	365, 497
MaeII	ACGT	3 cut(s)	216, 237, 333
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	4 cut(s)	46, 57, 94, 239
MfeI	CAATTG	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	2 cut(s)	89, 163
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	6 cut(s)	53, 90, 148, 305, 459, 485
Mox20I	TGGCCA	1 cut(s)	471
MroI	TCCGGA	2 cut(s)	36, 93
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	37, 94
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	186
NdeII	GATC	1 cut(s)	174
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	5 cut(s)	49, 323, 413, 476, 491
NlaIV	GGNNCC	5 cut(s)	6, 35, 41, 190, 264
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	250
PasI	CCCWGGG	1 cut(s)	427
PciI	ACATGT	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	5 cut(s)	17, 119, 145, 275, 323
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	334
PscI	ACATGT	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	426
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	5 cut(s)	6, 35, 41, 190, 264
PspPI	GGNCC	3 cut(s)	4, 34, 188
RsaI	GTAC	3 cut(s)	264, 332, 336
RsaNI	GTAC	3 cut(s)	263, 331, 335
SacII	CCGCGG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	4, 34, 188
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	428
SetI	ASST	8 cut(s)	45, 101, 219, 240, 316, 336, 406, 502
SfaNI	GCATC	3 cut(s)	246, 276, 422
Sfr303I	CCGCGG	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	34
SnaBI	TACGTA	1 cut(s)	334
Sse9I	AATT	2 cut(s)	89, 163
SsiI	CCGC	3 cut(s)	184, 186, 259
SspMI	CTAG	2 cut(s)	365, 497
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	3 cut(s)	219, 240, 336
TaqI	TCGA	5 cut(s)	57, 117, 177, 250, 278
TasI	AATT	2 cut(s)	89, 163
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	5 cut(s)	17, 119, 145, 275, 323
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TspDTI	ATGAA	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	2 cut(s)	365, 497
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.