Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007466.1

Orthogroup ID

OG0002370

Physical Location & Seq

Genomic Coordinates Forward (+)

40605 .. 42551

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007466.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ctgaatctgaatctgacccatctacatcctacactacccacatcccaacatcaagaacaatctttatctccaaaccaagtccccgaagttgcaaaaccagcgatcctgggatcatcgttgccaccgccggagctagacttcccaatcgaatacccccgcccccgacgagaagctcagcctggactgggtccagaagctcatgtctgtcttcaattggtcttcaagaaatctaacaccaacccaattcccgaggttcttcctgtccgggttttcgattccttggttctttgcgcctccaagattctccacaaagaacccaattgcttcaagatcgacgactgcggccttgactccaccgtcgtcgtcttcagagatgtccacggccagttgcacgactttctttttcttttgaaggatgctgggtaccctctgaagaatcgagtcttcgtcttcaatagggattttgttgacagaggagcttggggtcttgagactttcttgattttactgatttggaaagtgttgatgccgaagtggaaaccgggagggagggagggagggggagagagagagagtttgagatttggatcggaggggcagagagagagagaaggccaagaaaaaaggcaagaggatgacattttccttgacccagccaaggcttgtgccagctcggcccacacccaaacattggtgacgtctgcggagagaagagaaacagacatgttgatgaagagactgaagcaggagaagctgacgcgtggcgccgcagcaagcagaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

261

Amino Acids

29.42

Weight (kDa)

7.83

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63870 AT5G63870 AT5G63870
fragaria_vesca	FvH4_1g09700 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940 FvH4_1g09940
malus_domestica	MD02G1108000.v1.1 MD06G1225000.v1.1 MD15G1227500.v1.1
prunus_persica	Prupe.2G305700_v2.0.a1 Prupe.5G201300_v2.0.a1 Prupe.5G202500_v2.0.a1 Prupe.5G202600_v2.0.a1 Prupe.7G187800_v2.0.a1
pyrus_communis	pycom15g20250
rosa_chinensis	RchiOBHm_Chr1g0342291 RchiOBHm_Chr2g0096721 RchiOBHm_Chr4g0402221
rosa_laevigata	RLG00000016665 RLG00000035490
rosa_multiflora	Rmu_co8145630.1_g000001 Rmu_sc0004291.1_g000001 Rmu_sc0007075.1_g000017 Rmu_sc0007466.1_g000009 Rmu_sc0008602.1_g000006 Rmu_ssc0000215.1_g000062
rosa_roxburghii	Rroxscaffold_1G00022100 Rroxscaffold_2G00145380
rosa_rugosa	Rorug02G0060100 Rorug02G0060200 Rorug02G0060300 Rorug02G0222700 Rorug07G0349900
rosa_samantha	Rh2AG107400 Rh2BG109800 Rh2CG111600 Rh2DG111200 Rh4DG017000
rosa_wichuraiana	Rw2G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AatII	GACGTC	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	2 cut(s)	423, 764
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccII	CGCG	1 cut(s)	760
AciI	CCGC	5 cut(s)	125, 157, 342, 704, 768
AclWI	GGATC	3 cut(s)	97, 118, 595
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	3 cut(s)	352, 452, 761
AcyI	GRCGYC	2 cut(s)	698, 765
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	185, 658, 691
AflIII	ACRYGT	2 cut(s)	723, 758
AgsI	TTSAA	5 cut(s)	212, 223, 328, 412, 454
AjnI	CCWGG	2 cut(s)	105, 178
AluBI	AGCT	6 cut(s)	133, 173, 197, 479, 672, 754
AluI	AGCT	6 cut(s)	133, 173, 197, 479, 672, 754
Alw26I	GTCTC	2 cut(s)	485, 730
AlwI	GGATC	3 cut(s)	97, 118, 595
AlwNI	CAGNNNCTG	1 cut(s)	783
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	4 cut(s)	343, 382, 613, 675
ApeKI	GCWGC	1 cut(s)	770
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	293, 767
AspS9I	GGNCC	2 cut(s)	188, 676
AsuC2I	CCSGG	2 cut(s)	266, 543
AsuHPI	GGTGA	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	423, 764
BbsI	GAAGAC	5 cut(s)	200, 211, 358, 436, 442
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	107, 180
BcnI	CCSGG	2 cut(s)	266, 543
BcoDI	GTCTC	2 cut(s)	485, 730
BfaI	CTAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	768
BglI	GCCNNNNNGGC	1 cut(s)	674
BisI	GCNGC	3 cut(s)	343, 768, 771
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	3 cut(s)	344, 769, 772
Bme1390I	CCNGG	4 cut(s)	107, 180, 266, 543
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	188, 676
BmiI	GGNNCC	3 cut(s)	189, 425, 766
BmrFI	CCNGG	4 cut(s)	107, 180, 266, 543
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	406, 516
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	5 cut(s)	200, 211, 358, 436, 442
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	2 cut(s)	266, 543
BsaBI	GATNNNNATC	1 cut(s)	586
BsaHI	GRCGYC	2 cut(s)	698, 765
BsaJI	CCNNGG	5 cut(s)	106, 249, 279, 379, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 658, 691
Bse1I	ACTGG	2 cut(s)	189, 385
Bse8I	GATNNNNATC	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	107, 180
BseDI	CCNNGG	5 cut(s)	106, 249, 279, 379, 657
BseGI	GGATG	4 cut(s)	25, 41, 421, 640
BseJI	GATNNNNATC	1 cut(s)	586
BseLI	CCNNNNNNNGG	3 cut(s)	185, 658, 691
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	189, 385
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	782
BseYI	CCCAGC	2 cut(s)	419, 652
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	4 cut(s)	345, 384, 615, 677
BshNI	GGYRCC	2 cut(s)	423, 764
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	128, 265, 542
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	185, 658, 691
BsmAI	GTCTC	2 cut(s)	485, 730
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	345, 384, 615, 677
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	102, 110, 330, 587
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	125, 157, 342, 704, 768
BspANI	GGCC	4 cut(s)	345, 384, 615, 677
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	3 cut(s)	189, 425, 766
BspPI	GGATC	3 cut(s)	97, 118, 595
BspT107I	GGYRCC	2 cut(s)	423, 764
BsrI	ACTGG	2 cut(s)	189, 385
BssECI	CCNNGG	5 cut(s)	106, 249, 279, 379, 657
BssMI	GATC	4 cut(s)	102, 110, 330, 587
BssNI	GRCGYC	2 cut(s)	698, 765
BssT1I	CCWWGG	2 cut(s)	279, 657
Bst2UI	CCWGG	2 cut(s)	107, 180
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	706, 728
BstACI	GRCGYC	2 cut(s)	698, 765
BstC8I	GCNNGC	2 cut(s)	670, 775
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	4 cut(s)	25, 41, 421, 640
BstFNI	CGCG	1 cut(s)	760
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	2 cut(s)	293, 767
BstKTI	GATC	4 cut(s)	105, 113, 333, 590
BstMAI	GTCTC	2 cut(s)	485, 730
BstMBI	GATC	4 cut(s)	102, 110, 330, 587
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 674, 751
BstNI	CCWGG	2 cut(s)	107, 180
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	4 cut(s)	105, 178, 264, 541
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	5 cut(s)	200, 211, 358, 436, 442
BsuRI	GGCC	4 cut(s)	345, 384, 615, 677
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	4 cut(s)	25, 41, 421, 640
Cac8I	GCNNGC	2 cut(s)	670, 775
CaiI	CAGNNNCTG	1 cut(s)	783
CfoI	GCGC	2 cut(s)	293, 767
Cfr13I	GGNCC	2 cut(s)	188, 676
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	200, 724
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	174
DinI	GGCGCC	1 cut(s)	766
DpnI	GATC	4 cut(s)	104, 112, 332, 589
DpnII	GATC	4 cut(s)	102, 110, 330, 587
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	706, 728
EarI	CTCTTC	2 cut(s)	706, 728
Eco130I	CCWWGG	2 cut(s)	279, 657
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	3 cut(s)	352, 452, 761
Eco88I	CYCGRG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	105, 178
EcoT14I	CCWWGG	2 cut(s)	279, 657
EgeI	GGCGCC	1 cut(s)	766
EheI	GGCGCC	1 cut(s)	766
ErhI	CCWWGG	2 cut(s)	279, 657
FaeI	CATG	2 cut(s)	203, 727
FaiI	YATR	2 cut(s)	201, 725
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	199, 723
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	3 cut(s)	343, 768, 771
FokI	GGATG	4 cut(s)	12, 28, 428, 647
Fsp4HI	GCNGC	3 cut(s)	343, 768, 771
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	2 cut(s)	292, 766
GluI	GCNGC	3 cut(s)	343, 768, 771
GsaI	CCCAGC	2 cut(s)	423, 656
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	4 cut(s)	345, 384, 615, 677
HapII	CCGG	3 cut(s)	128, 265, 542
HgaI	GACGC	1 cut(s)	766
HhaI	GCGC	2 cut(s)	293, 767
Hin1I	GRCGYC	2 cut(s)	698, 765
Hin1II	CATG	2 cut(s)	203, 727
Hin6I	GCGC	2 cut(s)	291, 765
HinP1I	GCGC	2 cut(s)	291, 765
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	7 cut(s)	4, 10, 275, 301, 350, 436, 441
HpaII	CCGG	3 cut(s)	128, 265, 542
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	2 cut(s)	379, 469
Hpy188I	TCNGA	5 cut(s)	9, 15, 371, 432, 592
Hpy188III	TCNNGA	7 cut(s)	53, 191, 223, 248, 328, 488, 499
Hpy8I	GTNNAC	2 cut(s)	379, 469
Hpy99I	CGWCG	4 cut(s)	168, 338, 362, 365
HpyAV	CCTTC	2 cut(s)	406, 605
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	698
HpyCH4V	TGCA	2 cut(s)	92, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 674, 751
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	698
Hsp92I	GRCGYC	2 cut(s)	698, 765
Hsp92II	CATG	2 cut(s)	203, 727
HspAI	GCGC	2 cut(s)	291, 765
KasI	GGCGCC	1 cut(s)	764
KpnI	GGTACC	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	102, 110, 330, 587
LmnI	GCTCC	2 cut(s)	130, 476
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	2 cut(s)	406, 516
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	698
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	4 cut(s)	104, 112, 332, 589
MboI	GATC	4 cut(s)	102, 110, 330, 587
MboII	GAAGA	9 cut(s)	200, 211, 248, 358, 436, 442, 445, 723, 745
MfeI	CAATTG	2 cut(s)	212, 319
MluCI	AATT	3 cut(s)	212, 243, 319
MluI	ACGCGT	1 cut(s)	758
Mly113I	GGCGCC	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	344, 450
MslI	CAYNNNNRTG	1 cut(s)	728
MspI	CCGG	3 cut(s)	128, 265, 542
MspR9I	CCNGG	4 cut(s)	107, 180, 266, 543
MunI	CAATTG	2 cut(s)	212, 319
MvaI	CCWGG	2 cut(s)	107, 180
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	3 cut(s)	98, 674, 751
NarI	GGCGCC	1 cut(s)	765
NciI	CCSGG	2 cut(s)	266, 543
NdeII	GATC	4 cut(s)	102, 110, 330, 587
NlaIII	CATG	2 cut(s)	203, 727
NlaIV	GGNNCC	3 cut(s)	189, 425, 766
NmeAIII	GCCGAG	1 cut(s)	653
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	1 cut(s)	727
PciI	ACATGT	1 cut(s)	723
PfeI	GAWTC	5 cut(s)	4, 10, 275, 301, 436
PflFI	GACNNNGTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	3 cut(s)	344, 769, 772
PleI	GAGTC	2 cut(s)	344, 449
PluTI	GGCGCC	1 cut(s)	768
PpsI	GAGTC	2 cut(s)	344, 449
PscI	ACATGT	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	105, 178
PspFI	CCCAGC	2 cut(s)	419, 652
PspGI	CCWGG	2 cut(s)	105, 178
PspN4I	GGNNCC	3 cut(s)	189, 425, 766
PspPI	GGNCC	2 cut(s)	188, 676
PstNI	CAGNNNCTG	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	728
SatI	GCNGC	3 cut(s)	343, 768, 771
Sau3AI	GATC	4 cut(s)	102, 110, 330, 587
Sau96I	GGNCC	2 cut(s)	188, 676
SchI	GAGTC	2 cut(s)	344, 450
ScrFI	CCNGG	4 cut(s)	107, 180, 266, 543
SetI	ASST	8 cut(s)	135, 175, 199, 255, 481, 674, 701, 756
SfaNI	GCATC	2 cut(s)	406, 516
SfoI	GGCGCC	1 cut(s)	766
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	212, 243, 319
SsiI	CCGC	5 cut(s)	125, 157, 342, 704, 768
SspDI	GGCGCC	1 cut(s)	764
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	105, 178, 264, 541
StyI	CCWWGG	2 cut(s)	279, 657
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	701
TaqI	TCGA	4 cut(s)	147, 273, 333, 439
TasI	AATT	3 cut(s)	212, 243, 319
TauI	GCSGC	2 cut(s)	345, 770
TfiI	GAWTC	5 cut(s)	4, 10, 275, 301, 436
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	1 cut(s)	746
Tth111I	GACNNNGTC	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	188
XceI	RCATGY	1 cut(s)	727
XspI	CTAG	1 cut(s)	134
ZraI	GACGTC	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.