Rmu_co8189216.1_g000001

Plant phosphoribosyltransferase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8189216.1
OG0015332
Physical Location & Seq
Forward (+)
1 .. 696
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8189216.1_g000001.1.cds

Sequence Viewer

Length: 696 bp
gccaccagaaatctcaggcgatgtaccagtgccagatcagcatgatcatattgaaatgatggcagcttcttctgtatcgaaatcagtaccggaaatcaagttcgtcggaggaatgaacggtccacagccaatggctcggcggccttcaggagttcccagctacacacagctggagccaactgaaagtatgtcaatcgatcgtccgacgtcgtttgatctggtggagaagatgcactacctcttcgttcgagtggtcaaggcccggtacctccccgccaacggcagacccgtcgtaaagatctccgcttccaactaccacgtgacgtcaactccggccagaaaaaccaactgcttcgagtgggaccagaccttcgctttcggccgccagtcgccggactccgcttccatccttgaagtctccgtgtgggacccgcccgtccccgaccccaccggcatggcctccgggcacaacttcctcggcggagtttgtttcgacgtggcggagatcccgctgcgtgacccgccggacagtcccttggccccgcaatggtacagactcgagggtggcgggtcccgcatcaacggtgatctgatgctcgccacgtggatgggaacccaagcagacgagtcgtttcccgacgcgtggaagaccgatactgccggaaaccctaatgcacgcgccaaggtgtaccagtc

Protein Analysis

232

Amino Acids

25.36

Weight (kDa)

5.2

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17980
fragaria_vesca FvH4_5g32500
malus_domestica MD14G1004500.v1.1
prunus_persica Prupe.7G007300_v2.0.a1
pyrus_communis pycom14g00300
rosa_chinensis RchiOBHm_Chr7g0229081
rosa_laevigata RLG00000001532
rosa_multiflora Rmu_co8189216.1_g000001 Rmu_sc0000271.1_g000019
rosa_roxburghii Rroxscaffold_3G00230740
rosa_rugosa Rorug07G0255500
rosa_samantha Rh7AG406700 Rh7BG386100 Rh7CG424400 Rh7DG401000
rosa_wichuraiana Rw7G033760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 435
AatII GACGTC 2 cut(s) 210, 327
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccII CGCG 2 cut(s) 642, 679
AclWI GGATC 1 cut(s) 500
AcoI YGGCCR 2 cut(s) 334, 380
AcuI CTGAAG 1 cut(s) 130
AcvI CACGTG 2 cut(s) 320, 604
AcyI GRCGYC 2 cut(s) 207, 324
AfaI GTAC 5 cut(s) 25, 88, 267, 552, 690
AfiI CCNNNNNNNGG 4 cut(s) 279, 392, 547, 643
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 2 cut(s) 54, 414
AjiI CACGTC 1 cut(s) 497
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 3 cut(s) 66, 160, 170
AluI AGCT 3 cut(s) 66, 160, 170
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 558
AoxI GGCC 6 cut(s) 141, 259, 334, 380, 457, 538
ApeKI GCWGC 2 cut(s) 63, 512
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
Asp718I GGTACC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 6 cut(s) 120, 260, 362, 428, 539, 571
AsuC2I CCSGG 2 cut(s) 263, 464
AsuHPI GGTGA 1 cut(s) 597
AvaI CYCGRG 1 cut(s) 558
AvaII GGWCC 4 cut(s) 120, 362, 428, 571
BaeGI GKGCMC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BbrPI CACGTG 2 cut(s) 320, 604
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 75, 499
BccI CCATC 3 cut(s) 53, 414, 602
BceAI ACGGC 1 cut(s) 296
BcgI CGANNNNNNTGC 4 cut(s) 272, 306, 610, 644
BclI TGATCA 1 cut(s) 44
BcnI CCSGG 2 cut(s) 263, 464
BcoDI GTCTC 1 cut(s) 422
BglII AGATCT 1 cut(s) 298
BisI GCNGC 4 cut(s) 64, 141, 383, 513
BlsI GCNGC 4 cut(s) 65, 142, 384, 514
Bme1390I CCNGG 2 cut(s) 263, 464
Bme18I GGWCC 4 cut(s) 120, 362, 428, 571
BmeT110I CYCGRG 1 cut(s) 558
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 6 cut(s) 120, 260, 362, 428, 539, 571
BmiI GGNNCC 9 cut(s) 175, 267, 363, 429, 430, 541, 572, 573, 614
BmrFI CCNGG 2 cut(s) 263, 464
BmsI GCATC 3 cut(s) 220, 583, 586
BpiI GAAGAC 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 263, 464
Bsa29I ATCGAT 1 cut(s) 196
BsaAI YACGTR 2 cut(s) 320, 604
BsaHI GRCGYC 2 cut(s) 207, 324
BsaJI CCNNGG 3 cut(s) 476, 535, 682
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 392, 547, 643
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 3 cut(s) 27, 386, 692
Bse3DI GCAATG 1 cut(s) 552
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 3 cut(s) 476, 535, 682
BseGI GGATG 2 cut(s) 406, 613
BseLI CCNNNNNNNGG 4 cut(s) 279, 392, 547, 643
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 27, 386, 692
BseSI GKGCMC 1 cut(s) 469
BseX3I CGGCCG 1 cut(s) 380
BseXI GCAGC 2 cut(s) 75, 499
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 642, 679
Bsh1285I CGRYCG 2 cut(s) 200, 383
BshFI GGCC 6 cut(s) 143, 261, 336, 382, 459, 540
BshNI GGYRCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 196
BsiEI CGRYCG 2 cut(s) 200, 383
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 8 cut(s) 90, 263, 333, 393, 451, 463, 525, 661
BslFI GGGAC 5 cut(s) 375, 423, 441, 517, 557
BslI CCNNNNNNNGG 4 cut(s) 279, 392, 547, 643
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 5 cut(s) 375, 423, 441, 517, 557
BsnI GGCC 6 cut(s) 143, 261, 336, 382, 459, 540
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
BspANI GGCC 6 cut(s) 143, 261, 336, 382, 459, 540
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 196
BspFNI CGCG 2 cut(s) 642, 679
BspLI GGNNCC 9 cut(s) 175, 267, 363, 429, 430, 541, 572, 573, 614
BspPI GGATC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 3 cut(s) 27, 386, 692
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 476, 535, 682
BssMI GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
BssNI GRCGYC 2 cut(s) 207, 324
BssT1I CCWWGG 2 cut(s) 535, 682
Bst4CI ACNGT 3 cut(s) 120, 531, 585
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 2 cut(s) 207, 324
BstBAI YACGTR 2 cut(s) 320, 604
BstC8I GCNNGC 2 cut(s) 598, 677
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 406, 613
BstFNI CGCG 2 cut(s) 642, 679
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 7 cut(s) 38, 47, 200, 218, 301, 508, 590
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
BstMCI CGRYCG 2 cut(s) 200, 383
BstMWI GCNNNNNNNGC 3 cut(s) 38, 521, 574
BstSCI CCNGG 2 cut(s) 261, 462
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 2 cut(s) 642, 679
BstV1I GCAGC 2 cut(s) 75, 499
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 2 cut(s) 298, 505
BstXI CCANNNNNNTGG 2 cut(s) 455, 608
BstYI RGATCY 2 cut(s) 298, 505
BstZI CGGCCG 1 cut(s) 380
Bsu15I ATCGAT 1 cut(s) 196
BsuRI GGCC 6 cut(s) 143, 261, 336, 382, 459, 540
BsuTUI ATCGAT 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 2 cut(s) 406, 613
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 598, 677
CfoI GCGC 1 cut(s) 681
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 6 cut(s) 120, 260, 362, 428, 539, 571
ClaI ATCGAT 1 cut(s) 196
CseI GACGC 1 cut(s) 648
Csp6I GTAC 5 cut(s) 24, 87, 266, 551, 689
CviAII CATG 2 cut(s) 42, 455
CviQI GTAC 5 cut(s) 24, 87, 266, 551, 689
DdeI CTNAG 1 cut(s) 14
DpnI GATC 7 cut(s) 37, 46, 199, 217, 300, 507, 589
DpnII GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
DrdI GACNNNNNNGTC 1 cut(s) 435
DseDI GACNNNNNNGTC 1 cut(s) 435
EaeI YGGCCR 2 cut(s) 334, 380
EagI CGGCCG 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 2 cut(s) 496, 516
EclXI CGGCCG 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 535, 682
Eco47I GGWCC 4 cut(s) 120, 362, 428, 571
Eco52I CGGCCG 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 130
Eco72I CACGTG 2 cut(s) 320, 604
Eco88I CYCGRG 1 cut(s) 558
EcoO109I RGGNCCY 2 cut(s) 428, 571
EcoT14I CCWWGG 2 cut(s) 535, 682
ErhI CCWWGG 2 cut(s) 535, 682
FaeI CATG 2 cut(s) 45, 458
FaiI YATR 4 cut(s) 43, 49, 189, 456
FaqI GGGAC 5 cut(s) 375, 423, 441, 517, 557
FatI CATG 2 cut(s) 41, 454
FauI CCCGC 7 cut(s) 281, 439, 517, 529, 550, 561, 582
FbaI TGATCA 1 cut(s) 44
Fnu4HI GCNGC 4 cut(s) 64, 141, 383, 513
FokI GGATG 2 cut(s) 393, 620
Fsp4HI GCNGC 4 cut(s) 64, 141, 383, 513
GlaI GCGC 1 cut(s) 680
GluI GCNGC 4 cut(s) 64, 141, 383, 513
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 6 cut(s) 143, 261, 336, 382, 459, 540
HapII CCGG 8 cut(s) 90, 263, 333, 393, 451, 463, 525, 661
HgaI GACGC 1 cut(s) 648
HhaI GCGC 1 cut(s) 681
Hin1I GRCGYC 2 cut(s) 207, 324
Hin1II CATG 2 cut(s) 45, 458
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 396, 556, 627
HpaII CCGG 8 cut(s) 90, 263, 333, 393, 451, 463, 525, 661
HphI GGTGA 1 cut(s) 597
Hpy166II GTNNAC 3 cut(s) 123, 328, 689
Hpy188I TCNGA 3 cut(s) 108, 205, 592
Hpy188III TCNNGA 2 cut(s) 148, 636
Hpy8I GTNNAC 3 cut(s) 123, 328, 689
Hpy99I CGWCG 6 cut(s) 108, 209, 212, 294, 498, 642
HpyAV CCTTC 2 cut(s) 154, 380
HpyCH4III ACNGT 3 cut(s) 120, 531, 585
HpyCH4IV ACGT 5 cut(s) 207, 319, 324, 496, 603
HpyCH4V TGCA 2 cut(s) 233, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 521, 574
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 5 cut(s) 207, 319, 324, 496, 603
Hsp92I GRCGYC 2 cut(s) 207, 324
Hsp92II CATG 2 cut(s) 45, 458
HspAI GCGC 1 cut(s) 679
KflI GGGWCCC 2 cut(s) 428, 571
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 44
Kzo9I GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 75, 499
LweI GCATC 3 cut(s) 220, 583, 586
MaeII ACGT 5 cut(s) 207, 319, 324, 496, 603
MaeIII GTNAC 2 cut(s) 320, 516
MalI GATC 7 cut(s) 37, 46, 199, 217, 300, 507, 589
MboI GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
MboII GAAGA 4 cut(s) 61, 233, 239, 659
MflI RGATCY 2 cut(s) 298, 505
MhlI GDGCHC 1 cut(s) 469
MluI ACGCGT 1 cut(s) 640
MlyI GAGTC 3 cut(s) 390, 550, 636
MmeI TCCRAC 3 cut(s) 86, 228, 334
MnlI CCTC 6 cut(s) 102, 249, 279, 470, 486, 554
MslI CAYNNNNRTG 2 cut(s) 453, 606
MspA1I CMGCKG 2 cut(s) 170, 512
MspI CCGG 8 cut(s) 90, 263, 333, 393, 451, 463, 525, 661
MspR9I CCNGG 2 cut(s) 263, 464
MvnI CGCG 2 cut(s) 642, 679
MwoI GCNNNNNNNGC 3 cut(s) 38, 521, 574
NciI CCSGG 2 cut(s) 263, 464
NdeII GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
NlaIII CATG 2 cut(s) 45, 458
NlaIV GGNNCC 9 cut(s) 175, 267, 363, 429, 430, 541, 572, 573, 614
NmeAIII GCCGAG 2 cut(s) 116, 457
NmuCI GTSAC 2 cut(s) 320, 516
PaeR7I CTCGAG 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PkrI GCNGC 4 cut(s) 65, 142, 384, 514
Ple19I CGATCG 1 cut(s) 200
PleI GAGTC 3 cut(s) 390, 550, 635
PmaCI CACGTG 2 cut(s) 320, 604
PmlI CACGTG 2 cut(s) 320, 604
PpsI GAGTC 3 cut(s) 390, 550, 635
Ppu21I YACGTR 2 cut(s) 320, 604
PpuMI RGGWCCY 2 cut(s) 428, 571
Psp5II RGGWCCY 2 cut(s) 428, 571
PspCI CACGTG 2 cut(s) 320, 604
PspFI CCCAGC 1 cut(s) 156
PspN4I GGNNCC 9 cut(s) 175, 267, 363, 429, 430, 541, 572, 573, 614
PspPI GGNCC 6 cut(s) 120, 260, 362, 428, 539, 571
PspPPI RGGWCCY 2 cut(s) 428, 571
PspXI VCTCGAGB 1 cut(s) 558
PsuI RGATCY 2 cut(s) 298, 505
PvuI CGATCG 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 5 cut(s) 25, 88, 267, 552, 690
RsaNI GTAC 5 cut(s) 24, 87, 266, 551, 689
RseI CAYNNNNRTG 2 cut(s) 453, 606
SatI GCNGC 4 cut(s) 64, 141, 383, 513
Sau3AI GATC 7 cut(s) 35, 44, 197, 215, 298, 505, 587
Sau96I GGNCC 6 cut(s) 120, 260, 362, 428, 539, 571
SchI GAGTC 3 cut(s) 390, 550, 636
ScrFI CCNGG 2 cut(s) 263, 464
SduI GDGCHC 1 cut(s) 469
SfaNI GCATC 3 cut(s) 220, 583, 586
Sfr274I CTCGAG 1 cut(s) 558
SinI GGWCC 4 cut(s) 120, 362, 428, 571
SlaI CTCGAG 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 453, 606
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 261, 462
StyI CCWWGG 2 cut(s) 535, 682
TaaI ACNGT 3 cut(s) 120, 531, 585
TaiI ACGT 5 cut(s) 210, 322, 327, 499, 606
TaqI TCGA 6 cut(s) 78, 196, 248, 355, 493, 559
TaqII GACCGA 1 cut(s) 666
TauI GCSGC 2 cut(s) 143, 385
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 320, 516
TseI GCWGC 2 cut(s) 63, 512
Tsp45I GTSAC 2 cut(s) 320, 516
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 4 cut(s) 120, 362, 428, 571
XhoI CTCGAG 1 cut(s) 558
ZraI GACGTC 2 cut(s) 208, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.