Rmu_co8230389.1_g000001

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8230389.1
OG0020735
Physical Location & Seq
Forward (+)
1 .. 628
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8230389.1_g000001.1.cds

Sequence Viewer

Length: 397 bp
gtgtaaatcttatgagaaagccagaaagaaacttacagttctagaggcaccaaatattcttacaatagtgttgaagcgatttcagtctcgaaacttcgagaagctggataagtcggtacgttttcctgaggttctcaacttgtcaccatacatggacagaacaagtgataaatctcctttgtacaatctttatgccgtcgttgttcacctggatattatgaatgctgcatattcaggccattatatatgttatgtaaagaatagtcaaggcaactggttcaagattaatgacagctcggtatgttctctgtacatttctgattttgccattgggctcaaccttatttctttgttttgtgggaaaactttcgcactttttgaatccatagttgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

131

Amino Acids

14.96

Weight (kDa)

9.05

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AfaI GTAC 3 cut(s) 118, 183, 312
AgsI TTSAA 3 cut(s) 74, 281, 381
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 104, 295
AluI AGCT 2 cut(s) 104, 295
Alw26I GTCTC 1 cut(s) 91
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 225
AseI ATTAAT 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 136, 198
AxyI CCTNAGG 1 cut(s) 127
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 279
Bse21I CCTNAGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 337
Bsp1407I TGTACA 2 cut(s) 181, 310
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 47
BsrGI TGTACA 2 cut(s) 181, 310
BsrI ACTGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 38
BstAUI TGTACA 2 cut(s) 181, 310
BstDEI CTNAG 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 127
BsuRI GGCC 1 cut(s) 238
Csp6I GTAC 3 cut(s) 117, 182, 311
CviAII CATG 1 cut(s) 152
CviJI RGCY 5 cut(s) 21, 104, 238, 295, 335
CviKI_1 RGCY 5 cut(s) 21, 104, 238, 295, 335
CviQI GTAC 3 cut(s) 117, 182, 311
DdeI CTNAG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 337
Eco81I CCTNAGG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 1 cut(s) 155
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 1 cut(s) 155
HinfI GANTC 1 cut(s) 381
HphI GGTGA 2 cut(s) 136, 198
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 5 cut(s) 42, 88, 98, 126, 281
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 155
LpnPI CCDG 7 cut(s) 35, 90, 139, 195, 220, 222, 260
Lsp1109I GCAGC 1 cut(s) 212
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 337
MnlI CCTC 2 cut(s) 38, 122
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 210
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 142
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 1 cut(s) 227
PshBI ATTAAT 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 49
RsaI GTAC 3 cut(s) 118, 183, 312
RsaNI GTAC 3 cut(s) 117, 182, 311
SaqAI TTAA 1 cut(s) 286
SatI GCNGC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 337
SetI ASST 6 cut(s) 106, 122, 133, 211, 297, 343
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 89, 97
TatI WGTACW 2 cut(s) 181, 310
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 1 cut(s) 286
Tru9I TTAA 1 cut(s) 286
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 234
VspI ATTAAT 1 cut(s) 286
XbaI TCTAGA 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.