Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8364801.1

Orthogroup ID

OG0020735

Physical Location & Seq

Genomic Coordinates Forward (+)

135 .. 1096

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8364801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

atgaatcacagatgcaagtcttatgagaaggccaaaaagaagttgacaatactggaagctcccaatgtccttactgttgcattgaagcgatttcagtcagggaaatttgggaagatcaataagcctgtacggtttcctgaaattctggacttggcaccttacatgagtggtacaagtgataaatcacccatatacaagctttatggggtggttgttcacttggatgtcatgaatgccgcattttctggtcattatgtgtgctatgttaagaacttgcagaacaagtggttcaagattgatgatagcacggtaactgctgtggaacttgaaaatgtcttggcaaaaggggcgta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

117

Amino Acids

13.18

Weight (kDa)

9.54

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020735)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8230389.1_g000001 Rmu_co8364801.1_g000001 Rmu_sc0002299.1_g000003 Rmu_sc0002845.1_g000005 Rmu_sc0004371.1_g000018 Rmu_sc0006493.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	104, 141
AfaI	GTAC	2 cut(s)	129, 172
AgsI	TTSAA	3 cut(s)	85, 292, 329
AluBI	AGCT	2 cut(s)	59, 199
AluI	AGCT	2 cut(s)	59, 199
AoxI	GGCC	1 cut(s)	30
ApoI	RAATTY	2 cut(s)	104, 141
AsuHPI	GGTGA	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	1 cut(s)	2
Bse1I	ACTGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	76, 132, 310
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	229
CciI	TCATGA	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	128, 171
CviAII	CATG	2 cut(s)	163, 229
CviJI	RGCY	4 cut(s)	32, 59, 124, 199
CviKI_1	RGCY	4 cut(s)	32, 59, 124, 199
CviQI	GTAC	2 cut(s)	128, 171
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
FaeI	CATG	2 cut(s)	166, 232
FaiI	YATR	8 cut(s)	24, 164, 191, 193, 204, 230, 255, 264
FatI	CATG	2 cut(s)	162, 228
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	166, 232
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	2 cut(s)	45, 217
Hpy188III	TCNNGA	4 cut(s)	137, 146, 229, 292
Hpy8I	GTNNAC	2 cut(s)	45, 217
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	76, 132, 310
HpyCH4V	TGCA	3 cut(s)	15, 80, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	166, 232
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	38, 84, 131, 138, 150, 231
LweI	GCATC	1 cut(s)	2
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	124
MluCI	AATT	2 cut(s)	104, 141
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	166, 232
NlaIV	GGNNCC	1 cut(s)	156
PagI	TCATGA	1 cut(s)	228
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	156
RsaI	GTAC	2 cut(s)	129, 172
RsaNI	GTAC	2 cut(s)	128, 171
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	114
SetI	ASST	3 cut(s)	61, 160, 201
SfaNI	GCATC	1 cut(s)	2
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	104, 141
SsiI	CCGC	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	76, 132, 310
TasI	AATT	2 cut(s)	104, 141
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TspDTI	ATGAA	2 cut(s)	17, 245
XapI	RAATTY	2 cut(s)	104, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.