Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004371.1

Orthogroup ID

OG0020735

Physical Location & Seq

Genomic Coordinates Reverse (-)

74119 .. 77132

Gene Structure 3014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004371.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgttggggaaatttgggaagatcaataagcctgtacggtttcctgaaattctggacttggcgccttatatgagtggtacaagtgataaatcacccatatacaagctttatggggtggttgttcacttggatgtcatgaatgctgcattttctagtcattatgtctgctacgttaagaacttgcagaacaaatggttcaagattgatgacagcacgcatgccagtcaccgcctactagtcgtccctctatcacccccaccacgcgagtatgaaaggccgcccctcccaagcacccacatccccagcactgttccaaaactcccaaaccagatcgaaacactccgatgcagccagagcataacagaaacccactgcgccgccagccactcaacatccccaggtaacctctcctcccaccgtgtgtactccgatcttgggacgatcgactccagcatcgcacgctcatctcctgcccgacgctgcccttcccaggcagggcctccaacagatctggatagcgaactcagcaccatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

178

Amino Acids

19.61

Weight (kDa)

8.68

Isoelectric Point (pI)

70.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020735)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8230389.1_g000001 Rmu_co8364801.1_g000001 Rmu_sc0002299.1_g000003 Rmu_sc0002845.1_g000005 Rmu_sc0004371.1_g000018 Rmu_sc0006493.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	229, 278, 378
AcsI	RAATTY	2 cut(s)	11, 48
AcyI	GRCGYC	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	421
AfaI	GTAC	3 cut(s)	36, 79, 425
AfiI	CCNNNNNNNGG	3 cut(s)	435, 490, 495
AgsI	TTSAA	1 cut(s)	199
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	397, 489
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AoxI	GGCC	2 cut(s)	275, 497
ApeKI	GCWGC	3 cut(s)	143, 348, 480
ApoI	RAATTY	2 cut(s)	11, 48
AspLEI	GCGC	2 cut(s)	64, 377
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	84, 218, 243
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	130, 360, 467
BciT130I	CCWGG	2 cut(s)	399, 491
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	2 cut(s)	153, 236
BfoI	RGCGCY	1 cut(s)	65
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	5 cut(s)	144, 278, 349, 378, 481
BlsI	GCNGC	5 cut(s)	145, 279, 350, 379, 482
Bme1390I	CCNGG	2 cut(s)	399, 491
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	399, 491
BmsI	GCATC	2 cut(s)	335, 462
BpmI	CTGGAG	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	397, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 490, 495
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	399, 491
BseDI	CCNNGG	2 cut(s)	397, 489
BseGI	GGATG	3 cut(s)	136, 297, 392
BseLI	CCNNNNNNNGG	3 cut(s)	435, 490, 495
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	130, 360, 467
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	277, 499
BshNI	GGYRCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	227, 451
BslI	CCNNNNNNNGG	3 cut(s)	435, 490, 495
BsmFI	GGGAC	2 cut(s)	227, 451
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	277, 499
Bsp143I	GATC	5 cut(s)	21, 330, 430, 441, 508
BspACI	CCGC	3 cut(s)	229, 278, 378
BspANI	GGCC	2 cut(s)	277, 499
BspCNI	CTCAG	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	397, 489
BssMI	GATC	5 cut(s)	21, 330, 430, 441, 508
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	399, 491
Bst4CI	ACNGT	3 cut(s)	39, 310, 419
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	4 cut(s)	215, 219, 382, 460
BstDEI	CTNAG	1 cut(s)	524
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	136, 297, 392
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	2 cut(s)	64, 377
BstKTI	GATC	5 cut(s)	24, 333, 433, 444, 511
BstMBI	GATC	5 cut(s)	21, 330, 430, 441, 508
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	4 cut(s)	354, 381, 459, 525
BstNI	CCWGG	2 cut(s)	399, 491
BstNSI	RCATGY	1 cut(s)	221
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	397, 489
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	130, 360, 467
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	277, 499
BtgZI	GCGATG	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	136, 297, 392
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	306, 370
Cac8I	GCNNGC	4 cut(s)	215, 219, 382, 460
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	2 cut(s)	64, 377
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	35, 78, 424
CviAII	CATG	2 cut(s)	136, 218
CviJI	RGCY	6 cut(s)	31, 106, 277, 351, 384, 499
CviKI_1	RGCY	6 cut(s)	31, 106, 277, 351, 384, 499
CviQI	GTAC	3 cut(s)	35, 78, 424
DdeI	CTNAG	1 cut(s)	524
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	5 cut(s)	23, 332, 432, 443, 510
DpnII	GATC	5 cut(s)	21, 330, 430, 441, 508
DraIII	CACNNNGTG	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	497
EcoO65I	GGTNACC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	397, 489
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
FaeI	CATG	2 cut(s)	139, 221
FaqI	GGGAC	2 cut(s)	227, 451
FatI	CATG	2 cut(s)	135, 217
FauNDI	CATATG	1 cut(s)	533
Fnu4HI	GCNGC	5 cut(s)	144, 278, 349, 378, 481
FokI	GGATG	3 cut(s)	143, 284, 379
Fsp4HI	GCNGC	5 cut(s)	144, 278, 349, 378, 481
FspBI	CTAG	2 cut(s)	153, 236
GlaI	GCGC	2 cut(s)	63, 376
GluI	GCNGC	5 cut(s)	144, 278, 349, 378, 481
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	433
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	277, 499
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	2 cut(s)	64, 377
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	139, 221
Hin6I	GCGC	2 cut(s)	62, 375
HinP1I	GCGC	2 cut(s)	62, 375
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	3 cut(s)	84, 218, 243
Hpy166II	GTNNAC	2 cut(s)	124, 424
Hpy188I	TCNGA	2 cut(s)	344, 430
Hpy188III	TCNNGA	5 cut(s)	44, 53, 136, 199, 512
Hpy8I	GTNNAC	2 cut(s)	124, 424
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	3 cut(s)	39, 310, 419
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	146, 184, 348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	354, 381, 459, 525
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	139, 221
HspAI	GCGC	2 cut(s)	62, 375
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	5 cut(s)	21, 330, 430, 441, 508
Lsp1109I	GCAGC	3 cut(s)	130, 360, 467
LweI	GCATC	2 cut(s)	335, 462
MaeI	CTAG	2 cut(s)	153, 236
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	224, 401
MalI	GATC	5 cut(s)	23, 332, 432, 443, 510
MboI	GATC	5 cut(s)	21, 330, 430, 441, 508
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	2 cut(s)	11, 48
Mly113I	GGCGCC	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	5 cut(s)	255, 293, 416, 421, 510
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	129, 343
MspR9I	CCNGG	2 cut(s)	399, 491
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	2 cut(s)	399, 491
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	354, 381, 459, 525
NarI	GGCGCC	1 cut(s)	62
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	5 cut(s)	21, 330, 430, 441, 508
NlaIII	CATG	2 cut(s)	139, 221
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PagI	TCATGA	1 cut(s)	135
PctI	GAATGC	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	145, 279, 350, 379, 482
Ple19I	CGATCG	1 cut(s)	444
PleI	GAGTC	1 cut(s)	440
PluTI	GGCGCC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	397, 489
PspEI	GGTNACC	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	397, 489
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	508
PvuI	CGATCG	1 cut(s)	444
RsaI	GTAC	3 cut(s)	36, 79, 425
RsaNI	GTAC	3 cut(s)	35, 78, 424
RseI	CAYNNNNRTG	2 cut(s)	129, 343
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	5 cut(s)	144, 278, 349, 378, 481
Sau3AI	GATC	5 cut(s)	21, 330, 430, 441, 508
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	399, 491
SetI	ASST	4 cut(s)	108, 174, 403, 408
SfaNI	GCATC	2 cut(s)	335, 462
SfoI	GGCGCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	129, 343
SpeI	ACTAGT	1 cut(s)	235
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	2 cut(s)	11, 48
SsiI	CCGC	3 cut(s)	229, 278, 378
SspDI	GGCGCC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	153, 236
StyD4I	CCNGG	2 cut(s)	397, 489
TaaI	ACNGT	3 cut(s)	39, 310, 419
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	333, 444
TasI	AATT	2 cut(s)	11, 48
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	2 cut(s)	280, 380
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	313, 377
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	3 cut(s)	143, 348, 480
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	152, 285
TspRI	CASTG	2 cut(s)	313, 377
XapI	RAATTY	2 cut(s)	11, 48
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	2 cut(s)	153, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.