Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002299.1

Orthogroup ID

OG0020735

Physical Location & Seq

Genomic Coordinates Reverse (-)

17483 .. 19198

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002299.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgttggggaaatttgggaagatcaataagcctgtacggtttcctgaaattctggacttggcgccttatatgagtggtacaagtgataaatcacccatatacaagctttatggggtggttgttcacttggatgtcatgaatgctgcattttctagtcattatgtctgctacgttaagaacttgcagaacaaatggttcaagattgatgacagcacggttgtcagagtgcaaatcgagccggatgtgaattgtaaggctgcaaacctgttcatggtcaattgggcaaaattgatagaacccaggtcacttggaattcccagagtcttgttatccgacaagtggaaatgcagcatgtcgtcagcatacgaacttagattcacttcggtgttggagaaggaaaccgtcaaaccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

137

Amino Acids

15.65

Weight (kDa)

9.26

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020735)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8230389.1_g000001 Rmu_co8364801.1_g000001 Rmu_sc0002299.1_g000003 Rmu_sc0002845.1_g000005 Rmu_sc0004371.1_g000018 Rmu_sc0006493.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	11, 48, 312
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	36, 79
AfiI	CCNNNNNNNGG	2 cut(s)	271, 339
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	299
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	143, 257, 348
ApoI	RAATTY	3 cut(s)	11, 48, 312
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	130, 244, 360
BciT130I	CCWGG	1 cut(s)	301
BfaI	CTAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	3 cut(s)	144, 258, 349
BlsI	GCNGC	3 cut(s)	145, 259, 350
Bme1390I	CCNGG	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 339
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	136, 247
BseLI	CCNNNNNNNGG	2 cut(s)	271, 339
BseXI	GCAGC	3 cut(s)	130, 244, 360
BshNI	GGYRCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	271, 339
BsmI	GAATGC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	4 cut(s)	39, 217, 403, 411
BstACI	GRCGYC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	136, 247
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	130, 244, 360
BtsCI	GGATG	2 cut(s)	136, 247
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	35, 78
CviAII	CATG	3 cut(s)	136, 271, 352
CviJI	RGCY	4 cut(s)	31, 106, 238, 257
CviKI_1	RGCY	4 cut(s)	31, 106, 238, 257
CviQI	GTAC	2 cut(s)	35, 78
DdeI	CTNAG	1 cut(s)	371
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	299
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
FaeI	CATG	3 cut(s)	139, 274, 355
FatI	CATG	3 cut(s)	135, 270, 351
Fnu4HI	GCNGC	3 cut(s)	144, 258, 349
FokI	GGATG	2 cut(s)	143, 254
Fsp4HI	GCNGC	3 cut(s)	144, 258, 349
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	144, 258, 349
HaeII	RGCGCY	1 cut(s)	65
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	139, 274, 355
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	321, 375
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	224, 334
Hpy188III	TCNNGA	4 cut(s)	44, 53, 136, 199
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	4 cut(s)	39, 217, 403, 411
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	146, 184, 229, 260, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	139, 274, 355
HspAI	GCGC	1 cut(s)	62
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	8 cut(s)	38, 45, 57, 252, 278, 286, 313, 331
Lsp1109I	GCAGC	3 cut(s)	130, 244, 360
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	277
MluCI	AATT	6 cut(s)	11, 48, 247, 277, 287, 312
Mly113I	GGCGCC	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	357, 369
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	129, 383
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	3 cut(s)	139, 274, 355
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	355
OliI	CACNNNNGTG	1 cut(s)	383
PagI	TCATGA	1 cut(s)	135
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	145, 259, 350
PleI	GAGTC	1 cut(s)	329
PluTI	GGCGCC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	36, 79
RsaNI	GTAC	2 cut(s)	35, 78
RseI	CAYNNNNRTG	2 cut(s)	129, 383
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	3 cut(s)	144, 258, 349
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	301
SetI	ASST	4 cut(s)	108, 174, 267, 305
SfoI	GGCGCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	129, 383
Sse9I	AATT	6 cut(s)	11, 48, 247, 277, 287, 312
SspDI	GGCGCC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	4 cut(s)	39, 217, 403, 411
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	234
TasI	AATT	6 cut(s)	11, 48, 247, 277, 287, 312
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	3 cut(s)	143, 257, 348
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	152, 259
XapI	RAATTY	3 cut(s)	11, 48, 312
XceI	RCATGY	1 cut(s)	355
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.