Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006493.1

Orthogroup ID

OG0020735

Physical Location & Seq

Genomic Coordinates Reverse (-)

25873 .. 27146

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006493.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgccagctatgcctttagggttggttctaaggaagttgtcaagggaagacctactgctgcttcttgtaataccctacagcgtgctaccgaaacctccccgattcgaaccagacattgatctagaagtccggctctctccagacccatgcagggccaacaaaatcctgtccgacgacggcgaaagggctcgccaccggacagggaggaaaatgttggggaaatttgggaagatcaataagcttgtacggtttcctgaaattctggacttggcgccttatatgagtggtacaagtgataaatcacccatatacaagctttatggggtggttgttcacttggatgtcatgaatgctgcattttctagtcattatgtctgctacgttaagaacttgcagaacaaatggttcaagattgatgacagcacggtatgttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

9.3

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020735)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8230389.1_g000001 Rmu_co8364801.1_g000001 Rmu_sc0002299.1_g000003 Rmu_sc0002845.1_g000005 Rmu_sc0004371.1_g000018 Rmu_sc0006493.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	221, 258
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	2 cut(s)	246, 289
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	3 cut(s)	8, 241, 316
AluI	AGCT	3 cut(s)	8, 241, 316
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	58, 353
ApoI	RAATTY	2 cut(s)	221, 258
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	294
AsuII	TTCGAA	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	45, 340
BceAI	ACGGC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	122, 363
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	2 cut(s)	59, 354
BlsI	GCNGC	2 cut(s)	60, 355
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	45, 340
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	130, 196
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	118, 231
BspANI	GGCC	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	271
BssMI	GATC	2 cut(s)	118, 231
BssNI	GRCGYC	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	249, 427
BstACI	GRCGYC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	6, 83, 190
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	2 cut(s)	121, 234
BstMBI	GATC	2 cut(s)	118, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	45, 340
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	6, 83, 190
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	245, 288
CviAII	CATG	2 cut(s)	147, 346
CviJI	RGCY	6 cut(s)	8, 133, 155, 188, 241, 316
CviKI_1	RGCY	6 cut(s)	8, 133, 155, 188, 241, 316
CviQI	GTAC	2 cut(s)	245, 288
DdeI	CTNAG	1 cut(s)	29
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	2 cut(s)	120, 233
DpnII	GATC	2 cut(s)	118, 231
Eco24I	GRGCYC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
FaeI	CATG	2 cut(s)	150, 349
FatI	CATG	2 cut(s)	146, 345
Fnu4HI	GCNGC	2 cut(s)	59, 354
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	2 cut(s)	59, 354
FspBI	CTAG	2 cut(s)	122, 363
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	59, 354
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	130, 196
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	150, 349
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HindIII	AAGCTT	2 cut(s)	239, 314
HinfI	GANTC	1 cut(s)	102
HpaII	CCGG	2 cut(s)	130, 196
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	6 cut(s)	122, 140, 254, 263, 346, 409
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	176, 179
HpyCH4III	ACNGT	2 cut(s)	249, 427
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	150, 356, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	150, 349
HspAI	GCGC	1 cut(s)	272
KasI	GGCGCC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	118, 231
Lsp1109I	GCAGC	2 cut(s)	45, 340
MaeI	CTAG	2 cut(s)	122, 363
MaeII	ACGT	1 cut(s)	381
MalI	GATC	2 cut(s)	120, 233
MboI	GATC	2 cut(s)	118, 231
MboII	GAAGA	2 cut(s)	59, 241
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	221, 258
Mly113I	GGCGCC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	105, 198
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	2 cut(s)	130, 196
Mva1269I	GAATGC	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	272
NdeII	GATC	2 cut(s)	118, 231
NlaIII	CATG	2 cut(s)	150, 349
NlaIV	GGNNCC	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	105
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	60, 355
PluTI	GGCGCC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	153
RsaI	GTAC	2 cut(s)	246, 289
RsaNI	GTAC	2 cut(s)	245, 288
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	2 cut(s)	59, 354
Sau3AI	GATC	2 cut(s)	118, 231
Sau96I	GGNCC	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	6 cut(s)	10, 54, 97, 243, 318, 384
SfcI	CTRYAG	1 cut(s)	76
SfoI	GGCGCC	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	221, 258
SspDI	GGCGCC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	122, 363
TaaI	ACNGT	2 cut(s)	249, 427
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	221, 258
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseI	GCWGC	2 cut(s)	58, 353
TspDTI	ATGAA	2 cut(s)	362, 423
XapI	RAATTY	2 cut(s)	221, 258
XbaI	TCTAGA	1 cut(s)	121
XspI	CTAG	2 cut(s)	122, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.