Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276241.1

Orthogroup ID

OG0018894

Physical Location & Seq

Genomic Coordinates Reverse (-)

83 .. 775

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgaagaaggccgagtgggccagggaggcgcaggtggcggaggtggaggcggagaaggcagtggcgttgaaagaagccgagctgcaaaaggatgtggagatgatgaatgctatgactacgactgagaagctcaaggctgagttcttgagcaaggcaagtgttgaggccgagaccaaggcgcaagaggcgaattggaatctctaccaaaagcagaaggccgcggatgcaattctctacgaaaaggagaaagaggctgaggcgcagagagcaatggccgaggccaagttttatggtcgggcaaaaatagctgatggagagctttatgcaaagaagaaacaggccgagggacttgtggtgcttggacaagcggaaggtgtgtacctgcgcactcttatggactcattgggaggcaactatgaagcggtgagagactacttgatgatcaatcgtgggatatatcaagagattgctagtattaatggcgatgcggtgcggggacttgagccgaaaattagcatctggaccaacggcggagagggtggtgctgacggtggcaatgcggctatgaaggaggttgcgggagtttacaagatgttgccaccattgttcaagactgttcatgaacaaacaggaatgctgcctcctacttggatgggcaatctaccagttgctgatagttctaaacctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009877 GO:0016020 GO:0016324 GO:0022622 GO:0032501 GO:0032502 GO:0044403 GO:0044419 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048364 GO:0048731 GO:0048856 GO:0051704 GO:0071944 GO:0098590 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Band_7

Protein Analysis

230

Amino Acids

25.22

Weight (kDa)

5.25

Isoelectric Point (pI)

20.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018894)

Species	Orthologous Gene IDs
malus_domestica	MD16G1287500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0356261
rosa_multiflora	Rmu_co8276241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367560 Rroxscaffold_7G00170660
rosa_rugosa	Rorug04G0204300
rosa_samantha	Rh4AG261600 Rh4BG267500 Rh4CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc16I	TGCGCA	1 cut(s)	386
Acc36I	ACCTGC	2 cut(s)	22, 390
AccII	CGCG	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	273
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	70, 610
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	82, 130, 308, 319
AluI	AGCT	4 cut(s)	82, 130, 308, 319
Alw26I	GTCTC	2 cut(s)	164, 423
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	7 cut(s)	9, 18, 165, 216, 273, 279, 339
ApeKI	GCWGC	2 cut(s)	82, 637
AseI	ATTAAT	1 cut(s)	477
AspLEI	GCGC	4 cut(s)	31, 181, 262, 387
AspS9I	GGNCC	2 cut(s)	18, 522
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	69, 624
BccI	CCATC	2 cut(s)	305, 646
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	22
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	164, 423
BfaI	CTAG	1 cut(s)	471
BfuAI	ACCTGC	2 cut(s)	22, 390
BglI	GCCNNNNNGGC	2 cut(s)	17, 26
BisI	GCNGC	4 cut(s)	83, 219, 561, 638
BlsI	GCNGC	4 cut(s)	84, 220, 562, 639
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	18, 522
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	214, 475, 525
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	3 cut(s)	116, 166, 521
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	5 cut(s)	21, 174, 219, 276, 342
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	276, 562
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	5 cut(s)	21, 174, 219, 276, 342
BseGI	GGATG	3 cut(s)	97, 229, 657
BseMI	GCAATG	2 cut(s)	276, 562
BseMII	CTCAG	3 cut(s)	114, 129, 246
BseNI	ACTGG	1 cut(s)	665
BseXI	GCAGC	2 cut(s)	69, 624
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	7 cut(s)	11, 20, 167, 218, 275, 281, 341
BslFI	GGGAC	2 cut(s)	360, 510
BsmAI	GTCTC	2 cut(s)	164, 423
BsmFI	GGGAC	2 cut(s)	360, 510
BsmI	GAATGC	2 cut(s)	112, 639
BsnI	GGCC	7 cut(s)	11, 20, 167, 218, 275, 281, 341
Bso31I	GGTCTC	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	441
BspANI	GGCC	7 cut(s)	11, 20, 167, 218, 275, 281, 341
BspCNI	CTCAG	3 cut(s)	115, 130, 247
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	619
BspMI	ACCTGC	2 cut(s)	22, 390
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	276, 562
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	5 cut(s)	21, 174, 219, 276, 342
BssMI	GATC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	551, 616
BstDEI	CTNAG	3 cut(s)	123, 138, 255
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	97, 229, 657
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	4 cut(s)	31, 181, 262, 387
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	2 cut(s)	164, 423
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 26, 35, 56, 185, 224, 266, 305
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	69, 624
BsuRI	GGCC	7 cut(s)	11, 20, 167, 218, 275, 281, 341
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	97, 229, 657
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	2 cut(s)	22, 390
CaiI	CAGNNNCTG	1 cut(s)	671
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	4 cut(s)	31, 181, 262, 387
Cfr13I	GGNCC	2 cut(s)	18, 522
Cfr42I	CCGCGG	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	1 cut(s)	620
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	123, 138, 255
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	273
EciI	GGCGGA	3 cut(s)	53, 65, 546
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	623
FaiI	YATR	8 cut(s)	113, 291, 324, 395, 417, 457, 566, 621
FaqI	GGGAC	2 cut(s)	360, 510
FatI	CATG	1 cut(s)	619
FauI	CCCGC	2 cut(s)	486, 571
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	83, 219, 561, 638
FokI	GGATG	3 cut(s)	104, 236, 664
Fsp4HI	GCNGC	4 cut(s)	83, 219, 561, 638
FspBI	CTAG	1 cut(s)	471
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	4 cut(s)	30, 180, 261, 386
GluI	GCNGC	4 cut(s)	83, 219, 561, 638
HaeIII	GGCC	7 cut(s)	11, 20, 167, 218, 275, 281, 341
HhaI	GCGC	4 cut(s)	31, 181, 262, 387
Hin1II	CATG	1 cut(s)	623
Hin6I	GCGC	4 cut(s)	29, 179, 260, 385
HinP1I	GCGC	4 cut(s)	29, 179, 260, 385
HinfI	GANTC	2 cut(s)	196, 398
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	379, 586
Hpy188III	TCNNGA	5 cut(s)	145, 461, 520, 610, 620
Hpy8I	GTNNAC	2 cut(s)	379, 586
HpyAV	CCTTC	4 cut(s)	49, 208, 365, 562
HpyCH4III	ACNGT	2 cut(s)	551, 616
HpyCH4V	TGCA	3 cut(s)	85, 227, 326
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 26, 35, 56, 185, 224, 266, 305
HpyF3I	CTNAG	3 cut(s)	123, 138, 255
Hsp92II	CATG	1 cut(s)	623
HspAI	GCGC	4 cut(s)	29, 179, 260, 385
Ksp22I	TGATCA	1 cut(s)	441
KspI	CCGCGG	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	441
LpnPI	CCDG	8 cut(s)	7, 17, 34, 323, 395, 505, 615, 678
Lsp1109I	GCAGC	2 cut(s)	69, 624
LweI	GCATC	3 cut(s)	214, 475, 525
MaeI	CTAG	1 cut(s)	471
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	2 cut(s)	16, 343
MluCI	AATT	4 cut(s)	190, 228, 510, 688
MlyI	GAGTC	1 cut(s)	392
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	2 cut(s)	112, 639
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	8 cut(s)	17, 26, 35, 56, 185, 224, 266, 305
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	1 cut(s)	623
NmeAIII	GCCGAG	5 cut(s)	37, 103, 193, 301, 367
NsbI	TGCGCA	1 cut(s)	386
PagI	TCATGA	1 cut(s)	619
PaqCI	CACCTGC	1 cut(s)	22
PctI	GAATGC	2 cut(s)	112, 639
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	84, 220, 562, 639
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	18, 522
PstNI	CAGNNNCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	392
SacII	CCGCGG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	83, 219, 561, 638
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	2 cut(s)	18, 522
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	214, 475, 525
SfiI	GGCCNNNNNGGCC	1 cut(s)	17
Sfr303I	CCGCGG	1 cut(s)	222
SgrBI	CCGCGG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	3 cut(s)	131, 145, 500
SmoI	CTYRAG	3 cut(s)	131, 145, 500
Sse9I	AATT	4 cut(s)	190, 228, 510, 688
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	551, 616
TasI	AATT	4 cut(s)	190, 228, 510, 688
TauI	GCSGC	2 cut(s)	221, 563
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	2 cut(s)	82, 637
TspDTI	ATGAA	6 cut(s)	17, 119, 432, 581, 608, 636
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	522
VspI	ATTAAT	1 cut(s)	477
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.