Rroxscaffold_7G00170660

Flotillin-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
11058758 .. 11060464
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170660.1

Sequence Viewer

Length: 1248 bp
ATGTATAAGATAGCAAGCCCATCGGAGTATCTAGTTATCACTGGTGCCGGAATCAAAGACATCAAGATCGCAAAGAAGTCATGGGTGCTCCCCGGCCAGTCCTCGGTGGTCATTGACCTATCTCCAGTCAACTACACCTTCGAAGTCCAAGCCATGAGCGCCGAGAAGCTTCCTTTCGTCCTCCCCGCCGTCTTCACCATCGGCCCACGCGCCGAAGACATGGAGGCCCTCCAGAAGTACGCCAAGCTCATTTCCAACCACGACAAGAACTCCAACCATGTCAAGGAGCTCGTCCAGGGCATCATCGAGGGGCGAGACACGTGTGCTCGCGGCCTCGATGACAATGGAGGAGCTGAGGGAAGGGAAGACATTGCAAAACGCAGCCAAGATCGACTCCGAGACGAAGATCATTTCGACTCAGAGGCAAGGGGGGAGGGGAAGAAGGAGGAGATTAAGGTGAAAACGGAGGTCAAGGTTTATGAGAATCAGAGGGAAGCTGAGGTGGCTAGAGCGAATGCTGAGCTGGCAATGAAGAAGGCAGGGTGGGCTAAGGAGGCGCAGGTGGCCGAGGTCGAGGCAGAGAAGGCGGTGGCGATGAAGGATGCCGAGTTGCAGAAGGAGGTGGAGAGGATGAATGCATTGACTATGACTGAGAAGCTCAAGGCTGACTTCTTGAGCAAGGCTACTGTCGAATATGAAACCAAGGTACAAGAGGCAAATTGGGGGTTGTACAAGCAACAAAAAGAGGCGGAAGCAATTCTTTTCCAGAGGGAGAAAGAAGCGCAGGCCCAAAAAGCAATGGCAGAGGCAAAATTCTATGCATGTAAACAAGCAGCTGATGGAGAATTCTATGCCAAGAAGAAAGAGGCTGAGGGACTAATTGCACTTGGACAAGCCCAGGGTGTGTACCTGCGCACTCTTTTGGACTCATTGGGAGGCAACTATGCAGCCTTGAGGGACTTCTTGATGATCAATGGTGGGATGTTTCAAGAAATTGCTAAGATTAATGCTGAGGCTGTGCAAGGGCTTGCGCCAAAGATTAGTATCTGGACTAATGGCGGGGAGGGCGTGGATGGTTGTGGCAACAATGAAAATGCAGCTATGAAGGAGGTTGCTGGAGTTTACAAGATGTTACCACCGTTGTTCAAGACAGTGCATGAACAAACTGGAGTGCTGCCTCCCAGTTGGATGGCTACTTTGCCTGATAAATCTCCGTCAGGCAGCTCTAGCGACTTGACTTCAAATTGA

Protein Analysis

415

Amino Acids

45.57

Weight (kDa)

5.36

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018894)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
Acc16I TGCGCA 1 cut(s) 914
Acc36I ACCTGC 2 cut(s) 550, 918
AccB1I GGYRCC 1 cut(s) 44
AccII CGCG 2 cut(s) 210, 330
AciI CCGC 5 cut(s) 186, 330, 587, 749, 1059
AcoI YGGCCR 2 cut(s) 94, 564
AcsI RAATTY 2 cut(s) 812, 845
AcvI CACGTG 1 cut(s) 321
AfaI GTAC 4 cut(s) 239, 708, 731, 908
AfiI CCNNNNNNNGG 2 cut(s) 103, 283
AflIII ACRYGT 2 cut(s) 318, 320
AgsI TTSAA 3 cut(s) 989, 1147, 1242
AjnI CCWGG 2 cut(s) 294, 897
Alw21I GWGCWC 3 cut(s) 90, 291, 328
Alw26I GTCTC 2 cut(s) 309, 393
AoxI GGCC 6 cut(s) 94, 202, 225, 331, 564, 786
ApeKI GCWGC 6 cut(s) 381, 833, 947, 1097, 1174, 1221
ApoI RAATTY 2 cut(s) 812, 845
AseI ATTAAT 1 cut(s) 1005
Asp700I GAANNNNTTC 1 cut(s) 756
AspLEI GCGC 6 cut(s) 161, 212, 559, 784, 915, 1033
AspS9I GGNCC 3 cut(s) 203, 226, 787
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 187, 469
AsuII TTCGAA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 321
BbsI GAAGAC 3 cut(s) 184, 222, 372
Bbv12I GWGCWC 3 cut(s) 90, 291, 328
BbvCI CCTCAGC 4 cut(s) 354, 498, 870, 1011
BbvI GCAGC 6 cut(s) 393, 845, 959, 1109, 1161, 1233
BccI CCATC 5 cut(s) 28, 206, 833, 1067, 1183
BceAI ACGGC 1 cut(s) 173
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 296, 899
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 309, 393
BfaI CTAG 3 cut(s) 32, 507, 1227
BfoI RGCGCY 1 cut(s) 162
BfuAI ACCTGC 2 cut(s) 550, 918
BisI GCNGC 7 cut(s) 331, 382, 834, 948, 1098, 1175, 1222
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 7 cut(s) 332, 383, 835, 949, 1099, 1176, 1223
Bme1390I CCNGG 3 cut(s) 93, 296, 899
BmgT120I GGNCC 3 cut(s) 203, 226, 787
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 3 cut(s) 93, 296, 899
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 2 cut(s) 309, 592
BmuI ACTGGG 1 cut(s) 1176
BpiI GAAGAC 3 cut(s) 184, 222, 372
BpmI CTGGAG 4 cut(s) 108, 215, 1137, 1188
Bpu10I CCTNAGC 5 cut(s) 354, 498, 549, 870, 1011
Bpu1102I GCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 3 cut(s) 644, 694, 973
BpuMI CCSGG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 1043
BsaJI CCNNGG 7 cut(s) 91, 102, 295, 567, 702, 897, 898
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 283
Bse1I ACTGG 5 cut(s) 46, 97, 125, 1171, 1182
Bse3DI GCAATG 3 cut(s) 369, 534, 804
Bse8I GATNNNNATC 1 cut(s) 1043
BseBI CCWGG 2 cut(s) 296, 899
BseDI CCNNGG 7 cut(s) 91, 102, 295, 567, 702, 897, 898
BseGI GGATG 5 cut(s) 607, 636, 987, 1078, 1194
BseJI GATNNNNATC 1 cut(s) 1043
BseLI CCNNNNNNNGG 2 cut(s) 103, 283
BseMI GCAATG 3 cut(s) 369, 534, 804
BseMII CTCAG 7 cut(s) 345, 432, 489, 510, 642, 861, 1002
BseNI ACTGG 5 cut(s) 46, 97, 125, 1171, 1182
BseRI GAGGAG 2 cut(s) 363, 461
BseXI GCAGC 6 cut(s) 393, 845, 959, 1109, 1161, 1233
Bsh1236I CGCG 2 cut(s) 210, 330
BshFI GGCC 6 cut(s) 96, 204, 227, 333, 566, 788
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 3 cut(s) 90, 291, 328
BsiSI CCGG 2 cut(s) 48, 93
BslFI GGGAC 2 cut(s) 888, 971
BslI CCNNNNNNNGG 2 cut(s) 103, 283
BsmAI GTCTC 2 cut(s) 309, 393
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 2 cut(s) 888, 971
BsmI GAATGC 2 cut(s) 520, 640
BsnI GGCC 6 cut(s) 96, 204, 227, 333, 566, 788
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 3 cut(s) 90, 291, 328
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 4 cut(s) 66, 388, 406, 969
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 5 cut(s) 186, 330, 587, 749, 1059
BspANI GGCC 6 cut(s) 96, 204, 227, 333, 566, 788
BspCNI CTCAG 7 cut(s) 346, 431, 490, 511, 643, 862, 1003
BspFNI CGCG 2 cut(s) 210, 330
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 2 cut(s) 550, 918
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 3 cut(s) 369, 534, 804
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 5 cut(s) 46, 97, 125, 1171, 1182
BssECI CCNNGG 7 cut(s) 91, 102, 295, 567, 702, 897, 898
BssMI GATC 4 cut(s) 66, 388, 406, 969
BssT1I CCWWGG 1 cut(s) 702
Bst2UI CCWGG 2 cut(s) 296, 899
Bst4CI ACNGT 3 cut(s) 688, 1140, 1153
BstAUI TGTACA 1 cut(s) 729
BstBAI YACGTR 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 5 cut(s) 16, 328, 525, 786, 1029
BstDEI CTNAG 9 cut(s) 354, 418, 498, 519, 549, 651, 870, 999, 1011
BstF5I GGATG 5 cut(s) 607, 636, 987, 1078, 1194
BstFNI CGCG 2 cut(s) 210, 330
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 6 cut(s) 161, 212, 559, 784, 915, 1033
BstKTI GATC 4 cut(s) 69, 391, 409, 972
BstMAI GTCTC 2 cut(s) 309, 393
BstMBI GATC 4 cut(s) 66, 388, 406, 969
BstNI CCWGG 2 cut(s) 296, 899
BstNSI RCATGY 1 cut(s) 825
BstSCI CCNGG 3 cut(s) 91, 294, 897
BstUI CGCG 2 cut(s) 210, 330
BstV1I GCAGC 6 cut(s) 393, 845, 959, 1109, 1161, 1233
BstV2I GAAGAC 3 cut(s) 184, 222, 372
BstXI CCANNNNNNTGG 1 cut(s) 1189
BsuRI GGCC 6 cut(s) 96, 204, 227, 333, 566, 788
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 5 cut(s) 607, 636, 987, 1078, 1194
BtsIMutI CAGTG 2 cut(s) 39, 1158
BveI ACCTGC 2 cut(s) 550, 918
Cac8I GCNNGC 5 cut(s) 16, 328, 525, 786, 1029
CfoI GCGC 6 cut(s) 161, 212, 559, 784, 915, 1033
Cfr13I GGNCC 3 cut(s) 203, 226, 787
Csp6I GTAC 4 cut(s) 238, 707, 730, 907
CviAII CATG 6 cut(s) 81, 154, 220, 278, 822, 1157
CviQI GTAC 4 cut(s) 238, 707, 730, 907
DdeI CTNAG 9 cut(s) 354, 418, 498, 519, 549, 651, 870, 999, 1011
DpnI GATC 4 cut(s) 68, 390, 408, 971
DpnII GATC 4 cut(s) 66, 388, 406, 969
EaeI YGGCCR 2 cut(s) 94, 564
EciI GGCGGA 1 cut(s) 764
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
Eco72I CACGTG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 294, 897
EcoT14I CCWWGG 1 cut(s) 702
EcoT22I ATGCAT 2 cut(s) 640, 823
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 6 cut(s) 84, 157, 223, 281, 825, 1160
FalI AAGNNNNNCTT 4 cut(s) 653, 685, 744, 776
FaqI GGGAC 2 cut(s) 888, 971
FatI CATG 6 cut(s) 80, 153, 219, 277, 821, 1156
FauI CCCGC 2 cut(s) 193, 1052
FbaI TGATCA 1 cut(s) 969
Fnu4HI GCNGC 7 cut(s) 331, 382, 834, 948, 1098, 1175, 1222
FokI GGATG 5 cut(s) 614, 643, 994, 1085, 1201
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 7 cut(s) 331, 382, 834, 948, 1098, 1175, 1222
FspBI CTAG 3 cut(s) 32, 507, 1227
FspI TGCGCA 1 cut(s) 914
GlaI GCGC 6 cut(s) 160, 211, 558, 783, 914, 1032
GluI GCNGC 7 cut(s) 331, 382, 834, 948, 1098, 1175, 1222
GsuI CTGGAG 4 cut(s) 108, 215, 1137, 1188
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 6 cut(s) 96, 204, 227, 333, 566, 788
HapII CCGG 2 cut(s) 48, 93
HhaI GCGC 6 cut(s) 161, 212, 559, 784, 915, 1033
Hin1II CATG 6 cut(s) 84, 157, 223, 281, 825, 1160
Hin6I GCGC 6 cut(s) 159, 210, 557, 782, 913, 1031
HinP1I GCGC 6 cut(s) 159, 210, 557, 782, 913, 1031
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 5 cut(s) 51, 393, 416, 484, 926
HpaII CCGG 2 cut(s) 48, 93
HphI GGTGA 2 cut(s) 187, 469
Hpy166II GTNNAC 4 cut(s) 130, 827, 907, 1123
Hpy188I TCNGA 4 cut(s) 25, 398, 421, 489
Hpy188III TCNNGA 8 cut(s) 64, 232, 673, 766, 964, 989, 1048, 1147
Hpy8I GTNNAC 4 cut(s) 130, 827, 907, 1123
HpyAV CCTTC 8 cut(s) 148, 354, 436, 529, 577, 592, 610, 1099
HpyCH4III ACNGT 3 cut(s) 688, 1140, 1153
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 9 cut(s) 374, 613, 638, 821, 884, 947, 1021, 1097, 1156
HpyF3I CTNAG 9 cut(s) 354, 418, 498, 519, 549, 651, 870, 999, 1011
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 6 cut(s) 84, 157, 223, 281, 825, 1160
HspAI GCGC 6 cut(s) 159, 210, 557, 782, 913, 1031
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 4 cut(s) 66, 388, 406, 969
LmnI GCTCC 3 cut(s) 93, 286, 350
Lsp1109I GCAGC 6 cut(s) 393, 845, 959, 1109, 1161, 1233
LweI GCATC 2 cut(s) 309, 592
MaeI CTAG 3 cut(s) 32, 507, 1227
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 1131
MalI GATC 4 cut(s) 68, 390, 408, 971
MboI GATC 4 cut(s) 66, 388, 406, 969
MboII GAAGA 7 cut(s) 184, 227, 377, 416, 451, 544, 871
MhlI GDGCHC 3 cut(s) 90, 291, 328
MluCI AATT 7 cut(s) 718, 756, 812, 845, 879, 993, 1243
MlyI GAGTC 3 cut(s) 387, 410, 920
MmeI TCCRAC 3 cut(s) 279, 297, 1166
Mph1103I ATGCAT 2 cut(s) 640, 823
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 2 cut(s) 453, 1005
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 2 cut(s) 48, 93
MspR9I CCNGG 3 cut(s) 93, 296, 899
Mva1269I GAATGC 2 cut(s) 520, 640
MvaI CCWGG 2 cut(s) 296, 899
MvnI CGCG 2 cut(s) 210, 330
NciI CCSGG 1 cut(s) 93
NdeII GATC 4 cut(s) 66, 388, 406, 969
NlaIII CATG 6 cut(s) 84, 157, 223, 281, 825, 1160
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 3 cut(s) 187, 592, 631
NsbI TGCGCA 1 cut(s) 914
NsiI ATGCAT 2 cut(s) 640, 823
NspI RCATGY 1 cut(s) 825
NspV TTCGAA 1 cut(s) 141
PaqCI CACCTGC 1 cut(s) 550
PasI CCCWGGG 1 cut(s) 898
PctI GAATGC 2 cut(s) 520, 640
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 2 cut(s) 51, 484
PkrI GCNGC 7 cut(s) 332, 383, 835, 949, 1099, 1176, 1223
PleI GAGTC 3 cut(s) 387, 410, 920
PmaCI CACGTG 1 cut(s) 321
PmlI CACGTG 1 cut(s) 321
PpsI GAGTC 3 cut(s) 387, 410, 920
Ppu21I YACGTR 1 cut(s) 321
PshBI ATTAAT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 294, 897
PspCI CACGTG 1 cut(s) 321
PspGI CCWGG 2 cut(s) 294, 897
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 3 cut(s) 203, 226, 787
PvuII CAGCTG 1 cut(s) 836
RsaI GTAC 4 cut(s) 239, 708, 731, 908
RsaNI GTAC 4 cut(s) 238, 707, 730, 907
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 453, 1005
SatI GCNGC 7 cut(s) 331, 382, 834, 948, 1098, 1175, 1222
Sau3AI GATC 4 cut(s) 66, 388, 406, 969
Sau96I GGNCC 3 cut(s) 203, 226, 787
SchI GAGTC 3 cut(s) 387, 410, 920
ScrFI CCNGG 3 cut(s) 93, 296, 899
SduI GDGCHC 3 cut(s) 90, 291, 328
SfaNI GCATC 2 cut(s) 309, 592
SfuI TTCGAA 1 cut(s) 141
SmlI CTYRAG 3 cut(s) 659, 673, 952
SmoI CTYRAG 3 cut(s) 659, 673, 952
Sse9I AATT 7 cut(s) 718, 756, 812, 845, 879, 993, 1243
SsiI CCGC 5 cut(s) 186, 330, 587, 749, 1059
SspMI CTAG 3 cut(s) 32, 507, 1227
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 91, 294, 897
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 3 cut(s) 688, 1140, 1153
TaiI ACGT 1 cut(s) 323
TaqI TCGA 7 cut(s) 141, 306, 336, 391, 414, 573, 690
TasI AATT 7 cut(s) 718, 756, 812, 845, 879, 993, 1243
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 51, 484
Tru1I TTAA 2 cut(s) 453, 1005
Tru9I TTAA 2 cut(s) 453, 1005
TscAI CASTG 2 cut(s) 46, 1158
TseI GCWGC 6 cut(s) 381, 833, 947, 1097, 1174, 1221
TspDTI ATGAA 7 cut(s) 545, 611, 647, 711, 1104, 1118, 1173
TspGWI ACGGA 2 cut(s) 479, 1203
TspRI CASTG 2 cut(s) 46, 1158
VspI ATTAAT 1 cut(s) 1005
XapI RAATTY 2 cut(s) 812, 845
XceI RCATGY 1 cut(s) 825
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 3 cut(s) 32, 507, 1227
Zsp2I ATGCAT 2 cut(s) 640, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.