Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018894

Physical Location & Seq

Genomic Coordinates Reverse (-)

53564951 .. 53565611

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG278600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTGAGAAGCTCAAGGCTGACTTCTTGAGCAAGGGTACTGTCGAATATGAAACCAAGGTACAAGAGGCAAATTGGGGGTTGTGCAAGACTACAAGCAACAAAAAGAGGCGGAAGCAATTCTTTACCGGAGGGAGAAAGAAGCGCAGGCCCAAAAAGCAATGGCAGAGGCAAAATTCTATGTATGCATCTAAACAAGAAGCTGATGGAGAATTCTATGCCAAGAAGAAAGAGGCTGAGGGACTAATTGCACTTGGACAAGCCCAGGGTGTGTACCTGCGCACTCTTTTGGACTCATTGGGAGGCAACTATGCAGCCTTGAGGGACTTCTTGATGATCAATGGTGGGATGTTTCAAGAAATTGCTAAGATTAATGCCGAGGCTGTGAGAGGGCTTGTGCCGACTGCCAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006950 GO:0008150 GO:0009506 GO:0009628 GO:0009987 GO:0010324 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0061024 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Band_7

Protein Analysis

138

Amino Acids

15.59

Weight (kDa)

9.89

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018894)

Species	Orthologous Gene IDs
malus_domestica	MD16G1287500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0356261
rosa_multiflora	Rmu_co8276241.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367560 Rroxscaffold_7G00170660
rosa_rugosa	Rorug04G0204300
rosa_samantha	Rh4AG261600 Rh4BG267500 Rh4CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	285
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	175, 212
AfaI	GTAC	3 cut(s)	40, 63, 275
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	13, 203
AluI	AGCT	2 cut(s)	13, 203
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	175, 212
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	147, 282
AspS9I	GGNCC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	49, 340
BsaJI	CCNNGG	4 cut(s)	57, 264, 265, 378
BsaWI	WCCGGW	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	4 cut(s)	57, 264, 265, 378
BseGI	GGATG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	255, 338
BsmFI	GGGAC	2 cut(s)	255, 338
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	167
BssECI	CCNNGG	4 cut(s)	57, 264, 265, 378
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	6, 237, 366
BstF5I	GGATG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	147, 282
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	147, 282
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	39, 62, 274
CviQI	GTAC	3 cut(s)	39, 62, 274
DdeI	CTNAG	3 cut(s)	6, 237, 366
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	57
FaiI	YATR	5 cut(s)	51, 182, 186, 219, 312
FalI	AAGNNNNNCTT	4 cut(s)	8, 40, 107, 139
FaqI	GGGAC	2 cut(s)	255, 338
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	2 cut(s)	146, 281
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	2 cut(s)	147, 282
Hin6I	GCGC	2 cut(s)	145, 280
HinP1I	GCGC	2 cut(s)	145, 280
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	28, 331, 356
Hpy8I	GTNNAC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	87, 188, 251, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	3 cut(s)	6, 237, 366
HspAI	GCGC	2 cut(s)	145, 280
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	5 cut(s)	133, 142, 251, 278, 290
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	1 cut(s)	197
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	238
MluCI	AATT	6 cut(s)	73, 119, 175, 212, 246, 360
MlyI	GAGTC	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	372
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	336
NmeAIII	GCCGAG	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	190
PasI	CCCWGGG	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	150
RsaI	GTAC	3 cut(s)	40, 63, 275
RsaNI	GTAC	3 cut(s)	39, 62, 274
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	4 cut(s)	15, 63, 205, 279
SfaNI	GCATC	1 cut(s)	197
SmlI	CTYRAG	3 cut(s)	14, 28, 319
SmoI	CTYRAG	3 cut(s)	14, 28, 319
Sse9I	AATT	6 cut(s)	73, 119, 175, 212, 246, 360
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	45
TasI	AATT	6 cut(s)	73, 119, 175, 212, 246, 360
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	175, 212
XmnI	GAANNNNTTC	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.