Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277139.1

Orthogroup ID

OG0007767

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 772

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 532 bp

atgggttggggtggaagagcctcgaagagaggtggtggagatggtggaggaggggagagagacaccaccacttctggttgcatgtgtgctctttttcagctcttcgatttccatcaacttcagttccctaatttacaccaccaacaacactctctacgcccagaagatctctctctccccaaaggtgttgaagcaccaaggaatagcttggattcatctgaggaagggacttcattgtcatctatcacaaaagaagaagaaagtttaaacagtcctattctgaaaatccaacaaatcaaaacaagtggaggcacagtatcagatagcagcagctgctcaccaggaacaaagactccaagtctagtagcaagattaatgggtcttgaccttcttcctgaatctcactcgccctcttctacttcatcattaacaccaaatcctcgttccatttcaaagccacatttgaatctacaccctcttcggccttctcgccaacccctccaaaacaccaaagacttcaaagcagcaggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

177

Amino Acids

18.88

Weight (kDa)

7.81

Isoelectric Point (pI)

65.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62170 AT5G62170 AT5G62170 AT5G62170
fragaria_vesca	FvH4_7g28730 FvH4_7g28730
malus_domestica	MD00G1004300.v1.1 MD01G1193200.v1.1
prunus_persica	Prupe.2G287400_v2.0.a1 Prupe.2G287400_v2.0.a1
pyrus_communis	pycom01g20380 pycom07g23950
rosa_chinensis	RchiOBHm_Chr1g0376241
rosa_laevigata	RLG00000026617
rosa_multiflora	Rmu_co8277139.1_g000001 Rmu_ssc0000116.1_g000057
rosa_roxburghii	Rroxscaffold_4G00282280
rosa_rugosa	Rorug01G0394700 Rorug01G0394800
rosa_samantha	Rh1AG406200 Rh1BG369900 Rh1CG382800 Rh1DG399700
rosa_wichuraiana	Rw1G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	191, 453, 466, 520
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	427, 459
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	3 cut(s)	100, 207, 333
AluI	AGCT	3 cut(s)	100, 207, 333
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	333
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	4 cut(s)	327, 330, 333, 524
AseI	ATTAAT	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	320, 339, 342
BccI	CCATC	2 cut(s)	35, 120
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	518
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	4 cut(s)	328, 331, 334, 525
BlsI	GCNGC	4 cut(s)	329, 332, 335, 526
Bme1390I	CCNGG	1 cut(s)	342
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 337, 367
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	197
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	320, 339, 342
BshFI	GGCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	91
BslFI	GGGAC	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	518
BspQI	GCTCTTC	2 cut(s)	10, 107
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	272, 316
Bst6I	CTCTTC	5 cut(s)	10, 20, 107, 418, 483
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	3 cut(s)	320, 339, 342
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	518
CaiI	CAGNNNCTG	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	6 cut(s)	20, 100, 207, 333, 457, 484
CviKI_1	RGCY	6 cut(s)	20, 100, 207, 333, 457, 484
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DraI	TTTAAA	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	235
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eam1104I	CTCTTC	5 cut(s)	10, 20, 107, 418, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	5 cut(s)	10, 20, 107, 418, 483
Eco130I	CCWWGG	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	328, 331, 334, 525
Fsp4HI	GCNGC	4 cut(s)	328, 331, 334, 525
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	4 cut(s)	328, 331, 334, 525
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	4 cut(s)	212, 352, 398, 466
HphI	GGTGA	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	220, 282, 322
Hpy188III	TCNNGA	2 cut(s)	383, 395
HpyAV	CCTTC	3 cut(s)	218, 398, 495
HpyCH4III	ACNGT	2 cut(s)	272, 316
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	2 cut(s)	10, 107
LpnPI	CCDG	6 cut(s)	60, 174, 327, 354, 408, 513
Lsp1109I	GCAGC	3 cut(s)	320, 339, 342
MaeI	CTAG	1 cut(s)	362
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	9 cut(s)	27, 37, 94, 176, 266, 269, 383, 405, 470
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	313
MseI	TTAA	3 cut(s)	266, 374, 428
MspA1I	CMGCKG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	342
MssI	GTTTAAAC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	85
PciSI	GCTCTTC	2 cut(s)	10, 107
PfeI	GAWTC	3 cut(s)	212, 398, 466
PkrI	GCNGC	4 cut(s)	329, 332, 335, 526
PleI	GAGTC	1 cut(s)	346
PmeI	GTTTAAAC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	333
SapI	GCTCTTC	2 cut(s)	10, 107
SaqAI	TTAA	3 cut(s)	266, 374, 428
SatI	GCNGC	4 cut(s)	328, 331, 334, 525
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	7 cut(s)	34, 102, 187, 209, 335, 390, 532
Sse9I	AATT	1 cut(s)	130
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	272, 316
TaqI	TCGA	2 cut(s)	23, 105
TasI	AATT	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	212, 398, 466
Tru1I	TTAA	3 cut(s)	266, 374, 428
Tru9I	TTAA	3 cut(s)	266, 374, 428
TseI	GCWGC	4 cut(s)	327, 330, 333, 524
TspDTI	ATGAA	3 cut(s)	204, 222, 411
VspI	ATTAAT	1 cut(s)	374
XceI	RCATGY	1 cut(s)	85
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.