Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277985.1

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 673

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 541 bp

caatgggcttctcgacctgagcataccctacgctgacctcctgccgccggaccgctcaacccgcacaaagctagtgaccaaggcccttgagctcggctactctggcgtcacctacaaccgtacaatcaagggtgtcatgtccaatcgcaaccattgctccatccccctcctcactttcccttctcttctcgaacactcacctcacttcacctcctccgtcgacttccaccacaacctcctctgcgtcccacgtgccacccctttccgccaatacaggcgcctcacagtctgtgtcgaaacccctgccctggctcagtcgctcaattccagtaaccccgttttgaagacctacgatttggtggctgtcaatcccatgaaccaatctgttttcgatcaaacatgtgagaaagtaggagggagagacaaagatagaaagagattacagattggggctttgcagggcggaggtaagtgggaatacaaatttgttgctgggataagtgggataactttggccaattttggtgctttgggtcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

179

Amino Acids

19.73

Weight (kDa)

9.42

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	5 cut(s)	45, 53, 62, 266, 463
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	483
AcvI	CACGTG	1 cut(s)	252
AcyI	GRCGYC	2 cut(s)	106, 278
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	47, 308
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	71, 92
AluI	AGCT	2 cut(s)	71, 92
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	415
AoxI	GGCC	2 cut(s)	82, 514
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	50, 83
AsuHPI	GGTGA	3 cut(s)	101, 190, 200
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	94
BccI	CCATC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	281
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 83
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	106, 278
BsaJI	CCNNGG	2 cut(s)	79, 307
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 308
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	79, 307
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	47, 308
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	9, 327
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	159, 203, 228
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	2 cut(s)	84, 516
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	47, 308
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	84, 516
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	5 cut(s)	45, 53, 62, 266, 463
BspANI	GGCC	2 cut(s)	84, 516
BspCNI	CTCAG	2 cut(s)	10, 326
BspLI	GGNNCC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	79, 307
BssMI	GATC	1 cut(s)	392
BssNI	GRCGYC	2 cut(s)	106, 278
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	120, 287
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	2 cut(s)	106, 278
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	18, 313
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 103, 154
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	84, 516
BtsCI	GGATG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	50, 83
CpoI	CGGWCCG	1 cut(s)	50
CseI	GACGC	2 cut(s)	95, 233
Csp6I	GTAC	1 cut(s)	121
CspI	CGGWCCG	1 cut(s)	50
CviAII	CATG	3 cut(s)	137, 374, 400
CviJI	RGCY	9 cut(s)	8, 71, 84, 92, 97, 312, 363, 453, 516
CviKI_1	RGCY	9 cut(s)	8, 71, 84, 92, 97, 312, 363, 453, 516
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	18, 313
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EciI	GGCGGA	2 cut(s)	255, 478
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	94
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	3 cut(s)	140, 377, 403
FaiI	YATR	4 cut(s)	24, 138, 375, 401
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	136, 373, 399
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	496
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	84, 516
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	2 cut(s)	95, 233
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	2 cut(s)	106, 278
Hin1II	CATG	3 cut(s)	140, 377, 403
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	101, 190, 200
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188III	TCNNGA	2 cut(s)	12, 189
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	120, 287
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 103, 154
HpyF3I	CTNAG	2 cut(s)	18, 313
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	2 cut(s)	106, 278
Hsp92II	CATG	3 cut(s)	140, 377, 403
HspAI	GCGC	1 cut(s)	278
KasI	GGCGCC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	3 cut(s)	74, 107, 330
MalI	GATC	1 cut(s)	394
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	177, 356
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	3 cut(s)	323, 483, 518
MluNI	TGGCCA	1 cut(s)	516
Mly113I	GGCGCC	1 cut(s)	278
Mox20I	TGGCCA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	516
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	61, 103, 154
NarI	GGCGCC	1 cut(s)	278
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	3 cut(s)	140, 377, 403
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	74, 107
NspI	RCATGY	1 cut(s)	403
PciI	ACATGT	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	281
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	252
PscI	ACATGT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	50, 83
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Rsr2I	CGGWCCG	1 cut(s)	50
RsrII	CGGWCCG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	2 cut(s)	50, 83
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	94
SfoI	GGCGCC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	323, 483, 518
SsiI	CCGC	5 cut(s)	45, 53, 62, 266, 463
SspDI	GGCGCC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	120, 287
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	5 cut(s)	13, 190, 220, 295, 391
TasI	AATT	3 cut(s)	323, 483, 518
TauI	GCSGC	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	74, 107
Tsp45I	GTSAC	2 cut(s)	74, 107
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.