Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Forward (+)

34155559 .. 34156949

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGGCAACCTCTAAGGATATAAAAGGAGATCAATCTGCAGCAGCTCTGCCTATCACTTCTCGACCCGAGCATACCCTACGCGACCTCCCATCGCCGGACCGCTCAACCCGCGCAAAGCTAGTGACCAAGGCCCTCGAGCTCGCCTACTCGGCGTCGCCTACAACCGTACGTACAATCAAGGGTGTCATGTCCAATCACGACCATTGCTCCATCCTCCTCCTCACTTTCCCTTCTCTCCTCAAACACTCACCTCACTTCACCTCCTTCGTCGGCTTCCACCGCAACCTCCTCAACGTCCCACGCGCCACCCCTTTCGGCCAATACACGTGCCTCACCGTCCGTGTCGAAACCCCTACCTGTGCTCGGGCGCTCAATTCGGTAACCCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

131

Amino Acids

14.37

Weight (kDa)

9.95

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	3 cut(s)	84, 114, 306
AciI	CCGC	3 cut(s)	103, 112, 283
AcoI	YGGCCR	1 cut(s)	319
AcvI	CACGTG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	171, 175
AfiI	CCNNNNNNNGG	2 cut(s)	97, 366
AflIII	ACRYGT	1 cut(s)	327
AluBI	AGCT	3 cut(s)	47, 121, 142
AluI	AGCT	3 cut(s)	47, 121, 142
Alw21I	GWGCWC	2 cut(s)	144, 367
Ama87I	CYCGRG	3 cut(s)	68, 137, 366
AoxI	GGCC	2 cut(s)	132, 319
ApeKI	GCWGC	2 cut(s)	41, 44
AspLEI	GCGC	3 cut(s)	116, 308, 373
AspS9I	GGNCC	2 cut(s)	100, 133
AsuHPI	GGTGA	3 cut(s)	243, 253, 328
AvaI	CYCGRG	3 cut(s)	68, 137, 366
AvaII	GGWCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	144, 367
BbvI	GCAGC	2 cut(s)	53, 56
BccI	CCATC	2 cut(s)	100, 221
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	42, 45
BlsI	GCNGC	2 cut(s)	43, 46
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	3 cut(s)	68, 137, 366
BmgT120I	GGNCC	2 cut(s)	100, 133
BsaAI	YACGTR	2 cut(s)	173, 330
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	6 cut(s)	72, 102, 194, 224, 248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 366
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	97, 366
BseMI	GCAATG	1 cut(s)	205
BseRI	GAGGAG	4 cut(s)	209, 212, 230, 281
BseXI	GCAGC	2 cut(s)	53, 56
Bsh1236I	CGCG	3 cut(s)	84, 114, 306
BshFI	GGCC	2 cut(s)	134, 321
BsiHKAI	GWGCWC	2 cut(s)	144, 367
BsiHKCI	CYCGRG	3 cut(s)	68, 137, 366
BsiSI	CCGG	1 cut(s)	98
BsiWI	CGTACG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	97, 366
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	134, 321
BsoBI	CYCGRG	3 cut(s)	68, 137, 366
Bsp1286I	GDGCHC	2 cut(s)	144, 367
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	103, 112, 283
BspANI	GGCC	2 cut(s)	134, 321
BspFNI	CGCG	3 cut(s)	84, 114, 306
BspMAI	CTGCAG	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	169, 340
BstACI	GRCGYC	1 cut(s)	155
BstBAI	YACGTR	2 cut(s)	173, 330
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	3 cut(s)	84, 114, 306
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	3 cut(s)	116, 308, 373
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 152, 282
BstPI	GGTNACC	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	39
BstSNI	TACGTA	1 cut(s)	173
BstUI	CGCG	3 cut(s)	84, 114, 306
BstV1I	GCAGC	2 cut(s)	53, 56
BsuRI	GGCC	2 cut(s)	134, 321
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	3 cut(s)	116, 308, 373
Cfr13I	GGNCC	2 cut(s)	100, 133
CpoI	CGGWCCG	1 cut(s)	100
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	170, 174
CspI	CGGWCCG	1 cut(s)	100
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	47, 121, 134, 142, 276, 321
CviKI_1	RGCY	6 cut(s)	47, 121, 134, 142, 276, 321
CviQI	GTAC	2 cut(s)	170, 174
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	142
Eco72I	CACGTG	1 cut(s)	330
Eco88I	CYCGRG	3 cut(s)	68, 137, 366
Eco91I	GGTNACC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	23, 75, 191
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	42, 45
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	42, 45
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	3 cut(s)	115, 307, 372
GluI	GCNGC	2 cut(s)	42, 45
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	134, 321
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	3 cut(s)	116, 308, 373
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	3 cut(s)	114, 306, 371
HinP1I	GCGC	3 cut(s)	114, 306, 371
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	243, 253, 328
Hpy188III	TCNNGA	2 cut(s)	63, 200
Hpy99I	CGWCG	2 cut(s)	160, 275
HpyAV	CCTTC	2 cut(s)	243, 277
HpyCH4III	ACNGT	2 cut(s)	169, 340
HpyCH4IV	ACGT	3 cut(s)	172, 297, 329
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 152, 282
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	3 cut(s)	172, 297, 329
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	3 cut(s)	114, 306, 371
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	2 cut(s)	111, 373
Lsp1109I	GCAGC	2 cut(s)	53, 56
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	3 cut(s)	172, 297, 329
MaeIII	GTNAC	2 cut(s)	124, 382
MalI	GATC	1 cut(s)	33
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	144, 367
MluCI	AATT	1 cut(s)	376
MspI	CCGG	1 cut(s)	98
MvnI	CGCG	3 cut(s)	84, 114, 306
MwoI	GCNNNNNNNGC	3 cut(s)	111, 152, 282
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	193
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
Pfl23II	CGTACG	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	43, 46
PmaCI	CACGTG	1 cut(s)	330
PmlI	CACGTG	1 cut(s)	330
Ppu21I	YACGTR	2 cut(s)	173, 330
Psp124BI	GAGCTC	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	330
PspEI	GGTNACC	1 cut(s)	382
PspLI	CGTACG	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	100, 133
PspXI	VCTCGAGB	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	171, 175
RsaNI	GTAC	2 cut(s)	170, 174
Rsr2I	CGGWCCG	1 cut(s)	100
RsrII	CGGWCCG	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	2 cut(s)	42, 45
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	100, 133
SduI	GDGCHC	2 cut(s)	144, 367
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SnaBI	TACGTA	1 cut(s)	173
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	3 cut(s)	103, 112, 283
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	169, 340
TaiI	ACGT	3 cut(s)	175, 300, 332
TaqI	TCGA	3 cut(s)	64, 138, 348
TasI	AATT	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.