Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002792.1

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Forward (+)

46496 .. 46912

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002792.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ctgtgcataccctacgctgacctcccgccgccggaccgctcaacccgcgcaaagctagtgaccaaggccctcgagctcggctactccggcgtcgcctacaaccgtacaatcaagggtgtcatgtccaatcgcgaccattgctccatctccctcctcactttcccttctctcctcaaacactcacctcacttcacctcctccgtctgcttccaccgcaacctcctcggcgtcccacgcgccacccctttcagccaatacacgcgcctcactgtctgtgtcgaaacccttacccaggctcaggcgctcaattccggtaaccccgttttgaagacctacgatttggtggctgtcaagcccatgaaccaatctgctttcgatcaggcatgtgagaaaagtgggagagggagacaaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

138

Amino Acids

15.24

Weight (kDa)

9.67

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	4 cut(s)	48, 132, 237, 262
AciI	CCGC	5 cut(s)	26, 29, 37, 46, 214
AcyI	GRCGYC	2 cut(s)	90, 228
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	31, 292, 298
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	55, 76
AluI	AGCT	2 cut(s)	55, 76
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspLEI	GCGC	4 cut(s)	50, 239, 264, 304
AspS9I	GGNCC	2 cut(s)	34, 67
AsuHPI	GGTGA	2 cut(s)	174, 184
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	305
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	34, 67
BmrFI	CCNGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	90, 228
BsaJI	CCNNGG	3 cut(s)	63, 223, 291
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 292, 298
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	63, 223, 291
BseLI	CCNNNNNNNGG	3 cut(s)	31, 292, 298
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	4 cut(s)	143, 161, 187, 212
Bsh1236I	CGCG	4 cut(s)	48, 132, 237, 262
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	32, 87, 312
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	31, 292, 298
BsmAI	GTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	376
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	5 cut(s)	26, 29, 37, 46, 214
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	4 cut(s)	48, 132, 237, 262
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	63, 223, 291
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	2 cut(s)	90, 228
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	104, 271
BstACI	GRCGYC	2 cut(s)	90, 228
BstDEI	CTNAG	1 cut(s)	297
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstFNI	CGCG	4 cut(s)	48, 132, 237, 262
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	4 cut(s)	50, 239, 264, 304
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 87, 138, 213, 234
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	291
BstUI	CGCG	4 cut(s)	48, 132, 237, 262
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	132
CfoI	GCGC	4 cut(s)	50, 239, 264, 304
Cfr13I	GGNCC	2 cut(s)	34, 67
CpoI	CGGWCCG	1 cut(s)	34
CseI	GACGC	2 cut(s)	79, 217
Csp6I	GTAC	1 cut(s)	105
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	3 cut(s)	121, 358, 384
CviJI	RGCY	8 cut(s)	55, 68, 76, 81, 252, 296, 347, 355
CviKI_1	RGCY	8 cut(s)	55, 68, 76, 81, 252, 296, 347, 355
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	124, 361, 387
FaiI	YATR	4 cut(s)	8, 122, 359, 385
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	120, 357, 383
FauI	CCCGC	2 cut(s)	33, 53
Fnu4HI	GCNGC	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	4 cut(s)	49, 238, 263, 303
GluI	GCNGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	3 cut(s)	32, 87, 312
HgaI	GACGC	2 cut(s)	79, 217
HhaI	GCGC	4 cut(s)	50, 239, 264, 304
Hin1I	GRCGYC	2 cut(s)	90, 228
Hin1II	CATG	3 cut(s)	124, 361, 387
Hin6I	GCGC	4 cut(s)	48, 237, 262, 302
HinP1I	GCGC	4 cut(s)	48, 237, 262, 302
HpaII	CCGG	3 cut(s)	32, 87, 312
HphI	GGTGA	2 cut(s)	174, 184
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	104, 271
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 87, 138, 213, 234
HpyF3I	CTNAG	1 cut(s)	297
Hsp92I	GRCGYC	2 cut(s)	90, 228
Hsp92II	CATG	3 cut(s)	124, 361, 387
HspAI	GCGC	4 cut(s)	48, 237, 262, 302
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	7 cut(s)	45, 100, 278, 284, 305, 325, 365
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	58, 314
MalI	GATC	1 cut(s)	378
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	1 cut(s)	376
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	307
MspI	CCGG	3 cut(s)	32, 87, 312
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	4 cut(s)	48, 132, 237, 262
MwoI	GCNNNNNNNGC	5 cut(s)	45, 87, 138, 213, 234
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	124, 361, 387
NmeAIII	GCCGAG	2 cut(s)	57, 204
NmuCI	GTSAC	1 cut(s)	58
NruI	TCGCGA	1 cut(s)	132
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	34, 67
PspXI	VCTCGAGB	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	2 cut(s)	34, 67
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	24, 57, 78, 187, 197, 222, 335
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	5 cut(s)	26, 29, 37, 46, 214
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	104, 271
TaqI	TCGA	3 cut(s)	72, 279, 375
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	374
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	290
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.