Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Forward (+)

28968850 .. 28969563

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG304000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGCTTCTTCGACCTGAGCGTACCCTACACCGACCTCCCGCCGCCGGACCGCTCAACCCGCGCAAAGCTCGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTCGCTTACAACCGTACGATCAAGGGCGTCATCTTCCATCGCGACCTCCTCGACGTCCCACGCGCCTCCCCTTTCCGCCAGTACACGCGCCTCACCGTCTGCGCCGAAACCTCTGCCCAGGCTCAGGCCCTCAATTCCGGCAACCCCATTTTGAAGACCTACGATTTGGTAGCTGTCAAGCTCATGAACCAATCCGCTTTCGATCAGGCCTGTGAGAAATTGGAGGTAGATATAATTGCGATTGATTTTTCGGAGAAGTTACCATTTCGATTGAAGCAGCCTCTGGTTAAAGCTGCCATTGAGCGGAAGGTGTATTTTGAGATCACATATGCAGGTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

8.87

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	5 - 148	2.5e-28	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	428
AccBSI	CCGCTC	2 cut(s)	54, 409
AccII	CGCG	4 cut(s)	63, 147, 168, 193
AciI	CCGC	7 cut(s)	41, 44, 52, 61, 181, 300, 409
AcyI	GRCGYC	3 cut(s)	105, 132, 159
AfaI	GTAC	3 cut(s)	24, 121, 188
AfiI	CCNNNNNNNGG	3 cut(s)	46, 229, 408
AgsI	TTSAA	2 cut(s)	259, 379
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	70, 91, 278, 286, 398
AluI	AGCT	5 cut(s)	70, 91, 278, 286, 398
Alw21I	GWGCWC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	3 cut(s)	81, 231, 312
ApeKI	GCWGC	2 cut(s)	382, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AspLEI	GCGC	4 cut(s)	65, 170, 195, 209
AspS9I	GGNCC	3 cut(s)	49, 82, 232
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	385, 394
BccI	CCATC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	44, 383, 399
BlsI	GCNGC	3 cut(s)	45, 384, 400
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	49, 82, 232
BmrFI	CCNGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	266
Bpu10I	CCTNAGC	2 cut(s)	17, 228
BsaHI	GRCGYC	3 cut(s)	105, 132, 159
BsaJI	CCNNGG	2 cut(s)	78, 222
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 229, 408
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	78, 222
BseLI	CCNNNNNNNGG	3 cut(s)	46, 229, 408
BseMII	CTCAG	2 cut(s)	8, 242
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	385, 394
Bsh1236I	CGCG	4 cut(s)	63, 147, 168, 193
BshFI	GGCC	3 cut(s)	83, 233, 314
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	47, 102, 243
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	46, 229, 408
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	83, 233, 314
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	123, 307, 426
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	7 cut(s)	41, 44, 52, 61, 181, 300, 409
BspANI	GGCC	3 cut(s)	83, 233, 314
BspCNI	CTCAG	2 cut(s)	9, 241
BspFNI	CGCG	4 cut(s)	63, 147, 168, 193
BspHI	TCATGA	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	428
BsrBI	CCGCTC	2 cut(s)	54, 409
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	78, 222
BssMI	GATC	3 cut(s)	123, 307, 426
BssNI	GRCGYC	3 cut(s)	105, 132, 159
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	119, 202
BstACI	GRCGYC	3 cut(s)	105, 132, 159
BstDEI	CTNAG	2 cut(s)	17, 228
BstFNI	CGCG	4 cut(s)	63, 147, 168, 193
BstHHI	GCGC	4 cut(s)	65, 170, 195, 209
BstKTI	GATC	3 cut(s)	126, 310, 429
BstMBI	GATC	3 cut(s)	123, 307, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 102
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstUI	CGCG	4 cut(s)	63, 147, 168, 193
BstV1I	GCAGC	2 cut(s)	385, 394
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	83, 233, 314
BtgZI	GCGATG	1 cut(s)	128
BtuMI	TCGCGA	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	428
CaiI	CAGNNNCTG	1 cut(s)	388
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	4 cut(s)	65, 170, 195, 209
Cfr13I	GGNCC	3 cut(s)	49, 82, 232
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	2 cut(s)	94, 121
Csp6I	GTAC	3 cut(s)	23, 120, 187
CspI	CGGWCCG	1 cut(s)	49
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	3 cut(s)	23, 120, 187
DdeI	CTNAG	2 cut(s)	17, 228
DpnI	GATC	3 cut(s)	125, 309, 428
DpnII	GATC	3 cut(s)	123, 307, 426
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	82, 232
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	292
FaiI	YATR	4 cut(s)	290, 338, 433, 435
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	288
FauI	CCCGC	2 cut(s)	48, 68
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	44, 383, 399
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	44, 383, 399
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	4 cut(s)	64, 169, 194, 208
GluI	GCNGC	3 cut(s)	44, 383, 399
HaeIII	GGCC	3 cut(s)	83, 233, 314
HapII	CCGG	3 cut(s)	47, 102, 243
HgaI	GACGC	2 cut(s)	94, 121
HhaI	GCGC	4 cut(s)	65, 170, 195, 209
Hin1I	GRCGYC	3 cut(s)	105, 132, 159
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	4 cut(s)	63, 168, 193, 207
HinP1I	GCGC	4 cut(s)	63, 168, 193, 207
HpaII	CCGG	3 cut(s)	47, 102, 243
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	73, 146, 289
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	2 cut(s)	110, 161
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	119, 202
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 102
HpyF3I	CTNAG	2 cut(s)	17, 228
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	3 cut(s)	105, 132, 159
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	4 cut(s)	63, 168, 193, 207
Kzo9I	GATC	3 cut(s)	123, 307, 426
Lsp1109I	GCAGC	2 cut(s)	385, 394
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	73, 363
MalI	GATC	3 cut(s)	125, 309, 428
MbiI	CCGCTC	2 cut(s)	54, 409
MboI	GATC	3 cut(s)	123, 307, 426
MboII	GAAGA	2 cut(s)	130, 271
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	238, 323, 339
MseI	TTAA	1 cut(s)	393
MspI	CCGG	3 cut(s)	47, 102, 243
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	4 cut(s)	63, 147, 168, 193
MwoI	GCNNNNNNNGC	2 cut(s)	60, 102
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	3 cut(s)	123, 307, 426
NlaIII	CATG	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	73
NruI	TCGCGA	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
Pfl23II	CGTACG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	45, 384, 400
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspLI	CGTACG	1 cut(s)	119
PspPI	GGNCC	3 cut(s)	49, 82, 232
PspXI	VCTCGAGB	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	388
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	3 cut(s)	24, 121, 188
RsaNI	GTAC	3 cut(s)	23, 120, 187
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	3 cut(s)	44, 383, 399
Sau3AI	GATC	3 cut(s)	123, 307, 426
Sau96I	GGNCC	3 cut(s)	49, 82, 232
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	238, 323, 339
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	7 cut(s)	41, 44, 52, 61, 181, 300, 409
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	119, 202
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	5 cut(s)	12, 87, 156, 306, 373
TasI	AATT	3 cut(s)	238, 323, 339
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	382, 398
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.