Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020717

Physical Location & Seq

Genomic Coordinates Reverse (-)

57294166 .. 57301040

Gene Structure 6875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTCCTCACCGAACACATCCGCGACGCCGACCACTTCTACGCCAGATCTCACCTCTCCAGTCGTAGCAACAGCCTCACCTCCAATGGGCTTCTTAGCCTGAGCATACCCTACGCTGACCTCCCGCCGCCTGACCGCTCAACCCGTGCAAAGCTAGTGACCAAGGCCCTCGAGCTCGGCTACTCCGGCGTCGCCTACAACCGTACAATCAAGGGTGTCATGTCCAATCGTGACCATTGCTCCATCTCCCTCCTCACTTTCCCTTCTCTCCTCAAACACTCACCTCACTTCACCTCCTCCGTCTGCTTCCACCGCAACCTCCTCGGCGTCCCACGCGCCACCCCTTTCAGCCAATACACGCGCCTCACTGTCTGTGTCGAAACCCTTACCCAGGCTCAGGCGCTCAATTCCGGTAACCCCGTTTTGAAGACCTACGATTTGGTGGCTGTCAAGCCCATGAACCAATCTGCTTTCGATCAGGCATGTGAGAAAAGTGGGAGAGGGAGACAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0099116 GO:1901360 GO:1901363 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

CCT RNase_P_p30

Protein Analysis

171

Amino Acids

18.97

Weight (kDa)

9.73

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_p30	PF01876	43 - 164	2.3e-11	RNase P subunit p30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020717)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8277985.1_g000001 Rmu_sc0002792.1_g000017 Rmu_ssc0000438.1_g000022
rosa_roxburghii	Rroxscaffold_2G00109900
rosa_samantha	Rh2DG394200 Rh7BG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	3 cut(s)	24, 336, 361
AciI	CCGC	5 cut(s)	22, 125, 128, 136, 313
AcyI	GRCGYC	3 cut(s)	27, 189, 327
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	87, 391, 397
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	154, 175
AluI	AGCT	2 cut(s)	154, 175
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspLEI	GCGC	3 cut(s)	338, 363, 403
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	4 cut(s)	44, 70, 273, 283
AvaI	CYCGRG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	404
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	43
Bpu10I	CCTNAGC	2 cut(s)	101, 396
BsaHI	GRCGYC	3 cut(s)	27, 189, 327
BsaJI	CCNNGG	3 cut(s)	162, 322, 390
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 391, 397
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	3 cut(s)	162, 322, 390
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	87, 391, 397
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	92, 410
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	4 cut(s)	242, 260, 286, 311
Bsh1236I	CGCG	3 cut(s)	24, 336, 361
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	186, 411
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	87, 391, 397
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	47, 475
BspACI	CCGC	5 cut(s)	22, 125, 128, 136, 313
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	93, 409
BspFNI	CGCG	3 cut(s)	24, 336, 361
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	162, 322, 390
BssMI	GATC	2 cut(s)	47, 475
BssNI	GRCGYC	3 cut(s)	27, 189, 327
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	203, 370
BstACI	GRCGYC	3 cut(s)	27, 189, 327
BstDEI	CTNAG	3 cut(s)	95, 101, 396
BstEII	GGTNACC	1 cut(s)	413
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	3 cut(s)	24, 336, 361
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	3 cut(s)	338, 363, 403
BstKTI	GATC	2 cut(s)	50, 478
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	2 cut(s)	47, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 312, 333
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	486
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	3 cut(s)	24, 336, 361
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	366
CfoI	GCGC	3 cut(s)	338, 363, 403
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	3 cut(s)	35, 178, 316
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	3 cut(s)	220, 457, 483
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	3 cut(s)	95, 101, 396
DpnI	GATC	2 cut(s)	49, 477
DpnII	GATC	2 cut(s)	47, 475
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	223, 460, 486
FaiI	YATR	4 cut(s)	107, 221, 458, 484
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	3 cut(s)	219, 456, 482
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	3 cut(s)	337, 362, 402
GluI	GCNGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	186, 411
HgaI	GACGC	3 cut(s)	35, 178, 316
HhaI	GCGC	3 cut(s)	338, 363, 403
Hin1I	GRCGYC	3 cut(s)	27, 189, 327
Hin1II	CATG	3 cut(s)	223, 460, 486
Hin6I	GCGC	3 cut(s)	336, 361, 401
HinP1I	GCGC	3 cut(s)	336, 361, 401
HpaII	CCGG	2 cut(s)	186, 411
HphI	GGTGA	4 cut(s)	44, 70, 273, 283
Hpy188III	TCNNGA	1 cut(s)	230
Hpy99I	CGWCG	2 cut(s)	29, 194
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	203, 370
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 312, 333
HpyF3I	CTNAG	3 cut(s)	95, 101, 396
Hsp92I	GRCGYC	3 cut(s)	27, 189, 327
Hsp92II	CATG	3 cut(s)	223, 460, 486
HspAI	GCGC	3 cut(s)	336, 361, 401
Kzo9I	GATC	2 cut(s)	47, 475
LmnI	GCTCC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	3 cut(s)	157, 230, 413
MalI	GATC	2 cut(s)	49, 477
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	47, 475
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	406
MspI	CCGG	2 cut(s)	186, 411
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	3 cut(s)	24, 336, 361
MwoI	GCNNNNNNNGC	3 cut(s)	186, 312, 333
NdeII	GATC	2 cut(s)	47, 475
NlaIII	CATG	3 cut(s)	223, 460, 486
NmeAIII	GCCGAG	2 cut(s)	156, 303
NmuCI	GTSAC	2 cut(s)	157, 230
NspI	RCATGY	1 cut(s)	486
PaeR7I	CTCGAG	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	390
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	166
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	177
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	2 cut(s)	47, 475
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	9 cut(s)	57, 83, 123, 156, 177, 286, 296, 321, 434
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	5 cut(s)	22, 125, 128, 136, 313
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	203, 370
TaqI	TCGA	3 cut(s)	171, 378, 474
TasI	AATT	1 cut(s)	406
TauI	GCSGC	1 cut(s)	130
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	157, 230
Tsp45I	GTSAC	2 cut(s)	157, 230
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	389
XceI	RCATGY	1 cut(s)	486
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.