Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287111.1

Orthogroup ID

OG0015027

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 862

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287111.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 862 bp

atgtcagagaccgaacagcagcagcagcaagtagtgctccgaatccccgacaatgccctcttcgggaaatacgagctcggcaagcttctcggctgcggcgcgttcgcgaaggtgtaccacgcgcgaaatgtgttcaccgggcagagcgtggccgtgaaggtgatcaacaagaagaagctgaacggaaccagcctcatgtcgaacgtgaagcgcgagatttcgatcatgcggcggctccgccaccccaatatcgtcaagctctatgaggtcatggcttccaagagcaagatctacttcatcttggagttcgtcaagggaggcgagctttttgctaaagtttcaaaagggcggctctcggagaatctcagccgcaaatacttccagcagctgatctccgccgtcgggtactgccactccagaggagtctaccaccgcgatctgaagccggagaatttactggtagacgagaacgggaatttgaaagtttcggactttggactcagcgcggtcacgggtcagatccaacccgacgggctcctccacacgctttgtgggaccccggcttacgttgcgccggagattctgaccaagaaaggctacgacggagccaaggtggacatttggtcctgcggtattattctttatgtattgaacgccgggtatttgccgtttaacgacccgaatctgatggctatgtacaagaagatttacaagggcgagttccggtgcccgaagtggatgtcgccggatctgaagcggttcttgggtcggattttggataccaacccgatgacccggatcaccgtcgatgagatcctgaacgacccgtggttcagaggcggcggcgagtacaaggagatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009268 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

287

Amino Acids

32.48

Weight (kDa)

9.48

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30360
fragaria_vesca	FvH4_3g40260
malus_domestica	MD03G1054700.v1.1 MD11G1056100.v1.1
prunus_persica	Prupe.6G043300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072521
rosa_laevigata	RLG00000036309
rosa_multiflora	Rmu_co8287111.1_g000001 Rmu_co8453861.1_g000001 Rmu_sc0007873.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008620
rosa_rugosa	Rorug05G0418900
rosa_samantha	Rh5AG475200 Rh5BG495500 Rh5CG519300
rosa_wichuraiana	Rw5G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	726
AccI	GTMKAC	2 cut(s)	426, 462
AccII	CGCG	7 cut(s)	101, 107, 122, 124, 213, 435, 506
AclWI	GGATC	4 cut(s)	514, 756, 806, 808
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	451, 475
AcuI	CTGAAG	2 cut(s)	461, 773
AfaI	GTAC	4 cut(s)	116, 407, 698, 851
AfiI	CCNNNNNNNGG	2 cut(s)	63, 402
AgsI	TTSAA	3 cut(s)	342, 481, 652
AhdI	GACNNNNNGTC	1 cut(s)	622
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	6 cut(s)	76, 85, 178, 259, 325, 388
AluI	AGCT	6 cut(s)	76, 85, 178, 259, 325, 388
Alw21I	GWGCWC	2 cut(s)	39, 78
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	4 cut(s)	514, 756, 806, 808
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	5 cut(s)	19, 22, 25, 93, 385
ApoI	RAATTY	2 cut(s)	451, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
Asp700I	GAANNNNTTC	1 cut(s)	758
AspLEI	GCGC	5 cut(s)	101, 124, 213, 506, 574
AspS9I	GGNCC	2 cut(s)	555, 624
AsuC2I	CCSGG	4 cut(s)	139, 560, 658, 796
AsuHPI	GGTGA	3 cut(s)	127, 172, 793
AvaII	GGWCC	2 cut(s)	555, 624
BaeGI	GKGCMC	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	726
BanII	GRGCYC	2 cut(s)	78, 537
Bbv12I	GWGCWC	2 cut(s)	39, 78
BbvI	GCAGC	5 cut(s)	31, 34, 37, 80, 397
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	3 cut(s)	137, 383, 652
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 311, 345
BciVI	GTATCC	1 cut(s)	772
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	4 cut(s)	139, 560, 658, 796
BcoDI	GTCTC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	772
BglII	AGATCT	1 cut(s)	288
Bme1390I	CCNGG	4 cut(s)	139, 560, 658, 796
Bme18I	GGWCC	2 cut(s)	555, 624
BmeRI	GACNNNNNGTC	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	555, 624
BmiI	GGNNCC	7 cut(s)	187, 236, 536, 556, 557, 607, 728
BmrFI	CCNGG	4 cut(s)	139, 560, 658, 796
BpmI	CTGGAG	1 cut(s)	400
BpuMI	CCSGG	4 cut(s)	139, 560, 658, 796
BsaBI	GATNNNNATC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	3 cut(s)	558, 609, 827
BsaWI	WCCGGW	1 cut(s)	723
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 402
Bse1I	ACTGG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	558, 609, 827
BseGI	GGATG	1 cut(s)	744
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	63, 402
BseMII	CTCAG	2 cut(s)	379, 514
BseNI	ACTGG	1 cut(s)	462
BseRI	GAGGAG	2 cut(s)	435, 527
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	5 cut(s)	31, 34, 37, 80, 397
Bsh1236I	CGCG	7 cut(s)	101, 107, 122, 124, 213, 435, 506
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	726
BsiHKAI	GWGCWC	2 cut(s)	39, 78
BsiSI	CCGG	8 cut(s)	138, 446, 560, 575, 657, 724, 746, 796
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	63, 402
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	2
Bsp1286I	GDGCHC	4 cut(s)	39, 78, 537, 731
Bsp1407I	TGTACA	1 cut(s)	696
Bsp68I	TCGCGA	1 cut(s)	107
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	378, 513
BspFNI	CGCG	7 cut(s)	101, 107, 122, 124, 213, 435, 506
BspLI	GGNNCC	7 cut(s)	187, 236, 536, 556, 557, 607, 728
BspPI	GGATC	4 cut(s)	514, 756, 806, 808
BspT107I	GGYRCC	1 cut(s)	726
BspTNI	GGTCTC	1 cut(s)	2
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	558, 609, 827
BssT1I	CCWWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	83, 323
BstDEI	CTNAG	2 cut(s)	365, 500
BstDSI	CCRYGG	1 cut(s)	827
BstF5I	GGATG	1 cut(s)	744
BstFNI	CGCG	7 cut(s)	101, 107, 122, 124, 213, 435, 506
BstHHI	GCGC	5 cut(s)	101, 124, 213, 506, 574
BstMAI	GTCTC	1 cut(s)	2
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 82, 569
BstSCI	CCNGG	4 cut(s)	137, 558, 656, 794
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	7 cut(s)	101, 107, 122, 124, 213, 435, 506
BstV1I	GCAGC	5 cut(s)	31, 34, 37, 80, 397
BstX2I	RGATCY	4 cut(s)	288, 519, 748, 813
BstYI	RGATCY	4 cut(s)	288, 519, 748, 813
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	827
BtsCI	GGATG	1 cut(s)	744
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	83, 323
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	5 cut(s)	101, 124, 213, 506, 574
Cfr13I	GGNCC	2 cut(s)	555, 624
Csp6I	GTAC	4 cut(s)	115, 406, 697, 850
CspCI	CAANNNNNGTGG	2 cut(s)	530, 565
CviAII	CATG	3 cut(s)	196, 226, 271
CviQI	GTAC	4 cut(s)	115, 406, 697, 850
DdeI	CTNAG	2 cut(s)	365, 500
DriI	GACNNNNNGTC	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	65
Eam1105I	GACNNNNNGTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	2 cut(s)	227, 385
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	2 cut(s)	78, 537
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	2 cut(s)	555, 624
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	461, 773
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	2 cut(s)	78, 537
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	3 cut(s)	199, 229, 274
FaiI	YATR	6 cut(s)	197, 227, 264, 272, 645, 695
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 746, 778
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	3 cut(s)	195, 225, 270
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	2 cut(s)	426, 462
FokI	GGATG	1 cut(s)	751
FriOI	GRGCYC	2 cut(s)	78, 537
GlaI	GCGC	5 cut(s)	100, 123, 212, 505, 573
GsuI	CTGGAG	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	8 cut(s)	138, 446, 560, 575, 657, 724, 746, 796
HhaI	GCGC	5 cut(s)	101, 124, 213, 506, 574
Hin1II	CATG	3 cut(s)	199, 229, 274
Hin6I	GCGC	5 cut(s)	99, 122, 211, 504, 572
HinP1I	GCGC	5 cut(s)	99, 122, 211, 504, 572
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	6 cut(s)	42, 361, 423, 498, 580, 682
HpaII	CCGG	8 cut(s)	138, 446, 560, 575, 657, 724, 746, 796
HphI	GGTGA	3 cut(s)	127, 172, 793
Hpy166II	GTNNAC	5 cut(s)	115, 135, 427, 463, 616
Hpy188III	TCNNGA	4 cut(s)	64, 106, 417, 817
Hpy8I	GTNNAC	5 cut(s)	115, 135, 427, 463, 616
Hpy99I	CGWCG	4 cut(s)	404, 533, 605, 809
HpyAV	CCTTC	2 cut(s)	103, 151
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4IV	ACGT	2 cut(s)	204, 567
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 82, 569
HpyF3I	CTNAG	2 cut(s)	365, 500
HpySE526I	ACGT	2 cut(s)	204, 567
Hsp92II	CATG	3 cut(s)	199, 229, 274
HspAI	GCGC	5 cut(s)	99, 122, 211, 504, 572
KflI	GGGWCCC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	162
LmnI	GCTCC	4 cut(s)	42, 240, 540, 605
Lsp1109I	GCAGC	5 cut(s)	31, 34, 37, 80, 397
MaeII	ACGT	2 cut(s)	204, 567
MaeIII	GTNAC	1 cut(s)	508
MboII	GAAGA	3 cut(s)	52, 184, 715
MflI	RGATCY	4 cut(s)	288, 519, 748, 813
MhlI	GDGCHC	4 cut(s)	39, 78, 537, 731
MluCI	AATT	2 cut(s)	451, 475
MlyI	GAGTC	2 cut(s)	432, 492
MmeI	TCCRAC	2 cut(s)	547, 749
MnlI	CCTC	7 cut(s)	68, 203, 259, 311, 413, 548, 830
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	8 cut(s)	138, 446, 560, 575, 657, 724, 746, 796
MspR9I	CCNGG	4 cut(s)	139, 560, 658, 796
MvnI	CGCG	7 cut(s)	101, 107, 122, 124, 213, 435, 506
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 82, 569
NciI	CCSGG	4 cut(s)	139, 560, 658, 796
NlaIII	CATG	3 cut(s)	199, 229, 274
NlaIV	GGNNCC	7 cut(s)	187, 236, 536, 556, 557, 607, 728
NmeAIII	GCCGAG	2 cut(s)	57, 69
NmuCI	GTSAC	1 cut(s)	508
NruI	TCGCGA	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 210
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	4 cut(s)	42, 361, 580, 682
PleI	GAGTC	2 cut(s)	431, 492
PpsI	GAGTC	2 cut(s)	431, 492
PpuMI	RGGWCCY	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	555
PspN4I	GGNNCC	7 cut(s)	187, 236, 536, 556, 557, 607, 728
PspPI	GGNCC	2 cut(s)	555, 624
PspPPI	RGGWCCY	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	4 cut(s)	288, 519, 748, 813
PvuII	CAGCTG	1 cut(s)	388
RruI	TCGCGA	1 cut(s)	107
RsaI	GTAC	4 cut(s)	116, 407, 698, 851
RsaNI	GTAC	4 cut(s)	115, 406, 697, 850
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	672
Sau96I	GGNCC	2 cut(s)	555, 624
SchI	GAGTC	2 cut(s)	432, 492
ScrFI	CCNGG	4 cut(s)	139, 560, 658, 796
SduI	GDGCHC	4 cut(s)	39, 78, 537, 731
SinI	GGWCC	2 cut(s)	555, 624
Sse9I	AATT	2 cut(s)	451, 475
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	4 cut(s)	137, 558, 656, 794
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	1 cut(s)	805
TaiI	ACGT	2 cut(s)	207, 570
TaqI	TCGA	3 cut(s)	200, 221, 807
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	451, 475
TatI	WGTACW	2 cut(s)	696, 849
TauI	GCSGC	7 cut(s)	99, 232, 235, 352, 372, 843, 846
TfiI	GAWTC	4 cut(s)	42, 361, 580, 682
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	5 cut(s)	19, 22, 25, 93, 385
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	286
TspGWI	ACGGA	2 cut(s)	198, 618
VpaK11BI	GGWCC	2 cut(s)	555, 624
XapI	RAATTY	2 cut(s)	451, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmiI	GTMKAC	2 cut(s)	426, 462
XmnI	GAANNNNTTC	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.