Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007873.1

Orthogroup ID

OG0015027

Physical Location & Seq

Genomic Coordinates Reverse (-)

7556 .. 8467

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007873.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ctgaagccggagaatttactggtagacgagaacgggaatttgaaagtttcggactttggactcagcgcggtcacgggtcagatccaacccgacgggctcctccacacgctttgtgggaccccggcttacgttgcgccggagattctgaccaagaaaggctacgacggagccaaggtggacatttggtcctgcggtattattctttatgtattgaacgccgggtatttgccgtttaacgacccgaatctgatggctatgtacaagaagatttacaagggcgagttccggtgcccgaagtggatgtcgccggatctgaagcggttcttgggtcggattttggataccaacccgatgacccggatcaccgtcgatgagatcctgaacgacccgtggttcagaggcggcggcgagtacaaggagatcagtttctacgacgaagattacgataaaggcgaggaggagcagaaggccattacgagcttgaacgcttttgatatcatttcgttctcggcgggtctggatctttccggattgttcgaatcgagtaacccggtccaggactcggagcggatcgtgtcgtcggagtcggtggagacaatggtggggagagtcgaggagttcgctaaacaagagaaattaagagtgaggaagaagaagaattggggaatggagatggaagggcagaatggtaatttggtggttggagtcgaggtgttccggttgacggagagtctggtggttgtggaggccaagagaacaggcggggattctgggcctttccacgacacgtggaagaagctcaggtcccgcctgattttgggccgcgaagaagcagtcgaagaccaatcttccattgcttcttcttctgcatcttcttctgcttcttcttcagctgtacagttgatcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009268 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

303

Amino Acids

33.66

Weight (kDa)

4.94

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30360
fragaria_vesca	FvH4_3g40260
malus_domestica	MD03G1054700.v1.1 MD11G1056100.v1.1
prunus_persica	Prupe.6G043300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072521
rosa_laevigata	RLG00000036309
rosa_multiflora	Rmu_co8287111.1_g000001 Rmu_co8453861.1_g000001 Rmu_sc0007873.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008620
rosa_rugosa	Rorug05G0418900
rosa_samantha	Rh5AG475200 Rh5BG495500 Rh5CG519300
rosa_wichuraiana	Rw5G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	2 cut(s)	68, 825
AccIII	TCCGGA	1 cut(s)	527
AclWI	GGATC	6 cut(s)	76, 318, 368, 370, 528, 578
AcsI	RAATTY	2 cut(s)	13, 37
AcuI	CTGAAG	3 cut(s)	23, 335, 873
AcvI	CACGTG	1 cut(s)	789
AfaI	GTAC	3 cut(s)	260, 413, 897
AfiI	CCNNNNNNNGG	4 cut(s)	556, 562, 724, 817
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	3 cut(s)	43, 214, 484
AhdI	GACNNNNNGTC	2 cut(s)	184, 729
AjnI	CCWGG	1 cut(s)	555
AjuI	GAANNNNNNNTTGG	4 cut(s)	308, 340, 677, 709
AluBI	AGCT	3 cut(s)	480, 799, 893
AluI	AGCT	3 cut(s)	480, 799, 893
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	6 cut(s)	76, 318, 368, 370, 528, 578
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	4 cut(s)	468, 747, 773, 820
ApoI	RAATTY	2 cut(s)	13, 37
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 819, 851
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	68, 136
AspS9I	GGNCC	6 cut(s)	117, 186, 553, 773, 804, 820
AsuC2I	CCSGG	4 cut(s)	122, 220, 358, 551
AsuHPI	GGTGA	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	4 cut(s)	117, 186, 553, 804
BaeGI	GKGCMC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	99
BbrPI	CACGTG	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	846
BccI	CCATC	2 cut(s)	244, 667
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	334
BcnI	CCSGG	4 cut(s)	122, 220, 358, 551
BcoDI	GTCTC	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	403, 406, 823
BlsI	GCNGC	3 cut(s)	404, 407, 824
Bme1390I	CCNGG	5 cut(s)	122, 220, 358, 551, 557
Bme18I	GGWCC	4 cut(s)	117, 186, 553, 804
BmeRI	GACNNNNNGTC	2 cut(s)	184, 729
BmgT120I	GGNCC	6 cut(s)	117, 186, 553, 773, 804, 820
BmiI	GGNNCC	6 cut(s)	98, 118, 119, 169, 290, 806
BmrFI	CCNGG	5 cut(s)	122, 220, 358, 551, 557
BmsI	GCATC	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	800
Bpu14I	TTCGAA	1 cut(s)	537
BpuMI	CCSGG	4 cut(s)	122, 220, 358, 551
BsaAI	YACGTR	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	120, 171, 389
BsaWI	WCCGGW	3 cut(s)	285, 527, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 696, 726
Bsc4I	CCNNNNNNNGG	4 cut(s)	556, 562, 724, 817
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	852
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	3 cut(s)	120, 171, 389
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	556, 562, 724, 817
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	2 cut(s)	76, 814
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	4 cut(s)	89, 470, 473, 629
BseSI	GKGCMC	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	68, 825
BshFI	GGCC	4 cut(s)	470, 749, 775, 822
BshNI	GGYRCC	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	130, 790
BslI	CCNNNNNNNGG	4 cut(s)	556, 562, 724, 817
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	2 cut(s)	130, 790
BsnI	GGCC	4 cut(s)	470, 749, 775, 822
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	99, 293
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1407I	TGTACA	2 cut(s)	258, 895
Bsp143I	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
BspANI	GGCC	4 cut(s)	470, 749, 775, 822
BspCNI	CTCAG	2 cut(s)	75, 813
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	2 cut(s)	68, 825
BspLI	GGNNCC	6 cut(s)	98, 118, 119, 169, 290, 806
BspPI	GGATC	6 cut(s)	76, 318, 368, 370, 528, 578
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	852
BsrGI	TGTACA	2 cut(s)	258, 895
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	120, 171, 389
BssMI	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	367, 900
BstAUI	TGTACA	2 cut(s)	258, 895
BstBAI	YACGTR	1 cut(s)	789
BstBI	TTCGAA	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	62, 800
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	306
BstFNI	CGCG	2 cut(s)	68, 825
BstHHI	GCGC	2 cut(s)	68, 136
BstKTI	GATC	8 cut(s)	84, 313, 363, 378, 423, 523, 573, 906
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	5 cut(s)	120, 218, 356, 549, 555
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	2 cut(s)	68, 825
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	4 cut(s)	81, 310, 375, 520
BstYI	RGATCY	4 cut(s)	81, 310, 375, 520
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	4 cut(s)	470, 749, 775, 822
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	306
CfoI	GCGC	2 cut(s)	68, 136
Cfr13I	GGNCC	6 cut(s)	117, 186, 553, 773, 804, 820
Csp6I	GTAC	3 cut(s)	259, 412, 896
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviQI	GTAC	3 cut(s)	259, 412, 896
DdeI	CTNAG	2 cut(s)	62, 800
DpnI	GATC	8 cut(s)	83, 312, 362, 377, 422, 522, 572, 905
DpnII	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
DriI	GACNNNNNGTC	2 cut(s)	184, 729
Eam1105I	GACNNNNNGTC	2 cut(s)	184, 729
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	4 cut(s)	117, 186, 553, 804
Eco57I	CTGAAG	3 cut(s)	23, 335, 873
Eco72I	CACGTG	1 cut(s)	789
EcoO109I	RGGNCCY	2 cut(s)	117, 804
EcoRII	CCWGG	1 cut(s)	555
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	171
FaiI	YATR	2 cut(s)	207, 257
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	130, 790
FauI	CCCGC	3 cut(s)	505, 755, 815
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	403, 406, 823
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	403, 406, 823
GlaI	GCGC	2 cut(s)	67, 135
GluI	GCNGC	3 cut(s)	403, 406, 823
HaeIII	GGCC	4 cut(s)	470, 749, 775, 822
HhaI	GCGC	2 cut(s)	68, 136
Hin6I	GCGC	2 cut(s)	66, 134
HinP1I	GCGC	2 cut(s)	66, 134
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	25, 178, 723
Hpy188I	TCNGA	9 cut(s)	52, 81, 147, 249, 315, 333, 398, 565, 583
Hpy188III	TCNNGA	3 cut(s)	379, 518, 528
Hpy8I	GTNNAC	3 cut(s)	25, 178, 723
Hpy99I	CGWCG	5 cut(s)	95, 167, 371, 437, 583
HpyAV	CCTTC	2 cut(s)	460, 671
HpyCH4III	ACNGT	2 cut(s)	367, 900
HpyCH4IV	ACGT	2 cut(s)	129, 788
HpyCH4V	TGCA	1 cut(s)	869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	62, 800
HpySE526I	ACGT	2 cut(s)	129, 788
HspAI	GCGC	2 cut(s)	66, 134
KflI	GGGWCCC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
LmnI	GCTCC	4 cut(s)	102, 167, 460, 565
LweI	GCATC	1 cut(s)	878
MaeII	ACGT	2 cut(s)	129, 788
MaeIII	GTNAC	2 cut(s)	70, 545
MalI	GATC	8 cut(s)	83, 312, 362, 377, 422, 522, 572, 905
MbiI	CCGCTC	1 cut(s)	568
MboI	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
MflI	RGATCY	4 cut(s)	81, 310, 375, 520
MhlI	GDGCHC	2 cut(s)	99, 293
MluCI	AATT	5 cut(s)	13, 37, 635, 658, 691
MlyI	GAGTC	6 cut(s)	54, 554, 593, 618, 714, 739
MmeI	TCCRAC	4 cut(s)	109, 311, 561, 682
MnlI	CCTC	8 cut(s)	110, 392, 448, 451, 607, 639, 703, 739
MroI	TCCGGA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	234, 638
MspA1I	CMGCKG	1 cut(s)	893
MspR9I	CCNGG	5 cut(s)	122, 220, 358, 551, 557
MvaI	CCWGG	1 cut(s)	557
MvnI	CGCG	2 cut(s)	68, 825
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	4 cut(s)	122, 220, 358, 551
NdeII	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
NlaIV	GGNNCC	6 cut(s)	98, 118, 119, 169, 290, 806
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	2 cut(s)	441, 450
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	142, 244, 539, 767
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	404, 407, 824
PleI	GAGTC	6 cut(s)	54, 554, 592, 617, 713, 738
PmaCI	CACGTG	1 cut(s)	789
PmlI	CACGTG	1 cut(s)	789
PpsI	GAGTC	6 cut(s)	54, 554, 592, 617, 713, 738
Ppu21I	YACGTR	1 cut(s)	789
PpuMI	RGGWCCY	2 cut(s)	117, 804
Psp5II	RGGWCCY	2 cut(s)	117, 804
Psp6I	CCWGG	1 cut(s)	555
PspCI	CACGTG	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	6 cut(s)	98, 118, 119, 169, 290, 806
PspPI	GGNCC	6 cut(s)	117, 186, 553, 773, 804, 820
PspPPI	RGGWCCY	2 cut(s)	117, 804
PsuI	RGATCY	4 cut(s)	81, 310, 375, 520
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	3 cut(s)	260, 413, 897
RsaNI	GTAC	3 cut(s)	259, 412, 896
SaqAI	TTAA	2 cut(s)	234, 638
SatI	GCNGC	3 cut(s)	403, 406, 823
Sau3AI	GATC	8 cut(s)	81, 310, 360, 375, 420, 520, 570, 903
Sau96I	GGNCC	6 cut(s)	117, 186, 553, 773, 804, 820
SchI	GAGTC	6 cut(s)	54, 554, 593, 618, 714, 739
ScrFI	CCNGG	5 cut(s)	122, 220, 358, 551, 557
SduI	GDGCHC	2 cut(s)	99, 293
SetI	ASST	8 cut(s)	132, 177, 482, 714, 791, 801, 806, 895
SfaNI	GCATC	1 cut(s)	878
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	4 cut(s)	117, 186, 553, 804
Sse9I	AATT	5 cut(s)	13, 37, 635, 658, 691
StyD4I	CCNGG	5 cut(s)	120, 218, 356, 549, 555
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	367, 900
TaiI	ACGT	2 cut(s)	132, 791
TaqI	TCGA	7 cut(s)	369, 537, 542, 612, 708, 837, 906
TasI	AATT	5 cut(s)	13, 37, 635, 658, 691
TatI	WGTACW	3 cut(s)	258, 411, 895
TauI	GCSGC	3 cut(s)	405, 408, 825
TfiI	GAWTC	4 cut(s)	142, 244, 539, 767
Tru1I	TTAA	2 cut(s)	234, 638
Tru9I	TTAA	2 cut(s)	234, 638
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	180, 740
VpaK11BI	GGWCC	4 cut(s)	117, 186, 553, 804
XapI	RAATTY	2 cut(s)	13, 37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.