Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453861.1

Orthogroup ID

OG0015027

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 381

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ttgttcgaatcgagtaacccggtccaggactcggagcggatcgtgtcgtcggagtcggtggagacaatggtggggagagtcgaggagttcgctaaacaagagaaattaagagtgcggaagaagaagaattggggaatggagatggaagggcagaatggtaatttggtggttggagtcgaggtgttccggttgacggagagtctggtggttgtggaggccaagagaacaggcggggattctgggcctttccacgacacgtggaagaagctcaggtcccgcctgattttgggccgcgaagaagcagtcgaagaccaatcttccattgcttcttcttctgcatcttcttctgcttcttcttcagctgtacagttgatcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009268 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

126

Amino Acids

13.87

Weight (kDa)

5.35

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30360
fragaria_vesca	FvH4_3g40260
malus_domestica	MD03G1054700.v1.1 MD11G1056100.v1.1
prunus_persica	Prupe.6G043300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072521
rosa_laevigata	RLG00000036309
rosa_multiflora	Rmu_co8287111.1_g000001 Rmu_co8453861.1_g000001 Rmu_sc0007873.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008620
rosa_rugosa	Rorug05G0418900
rosa_samantha	Rh5AG475200 Rh5BG495500 Rh5CG519300
rosa_wichuraiana	Rw5G044150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	37
AccII	CGCG	1 cut(s)	294
AciI	CCGC	5 cut(s)	37, 115, 231, 277, 292
AclWI	GGATC	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	342
AcvI	CACGTG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	4 cut(s)	25, 31, 193, 286
AflIII	ACRYGT	1 cut(s)	255
AhdI	GACNNNNNGTC	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	268, 362
AluI	AGCT	2 cut(s)	268, 362
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	3 cut(s)	216, 242, 289
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
AspS9I	GGNCC	4 cut(s)	22, 242, 273, 289
AsuC2I	CCSGG	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	22, 273
BbrPI	CACGTG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	315
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	20, 26
Bme18I	GGWCC	2 cut(s)	22, 273
BmeRI	GACNNNNNGTC	1 cut(s)	198
BmgT120I	GGNCC	4 cut(s)	22, 242, 273, 289
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	20, 26
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 31, 193, 286
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	26
BseLI	CCNNNNNNNGG	4 cut(s)	25, 31, 193, 286
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	218, 244, 291
BsiSI	CCGG	2 cut(s)	20, 187
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	4 cut(s)	25, 31, 193, 286
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	218, 244, 291
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	39, 372
BspACI	CCGC	5 cut(s)	37, 115, 231, 277, 292
BspANI	GGCC	3 cut(s)	218, 244, 291
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	364
BssMI	GATC	2 cut(s)	39, 372
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	42, 375
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	39, 372
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	18, 24
BstUI	CGCG	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	218, 244, 291
Cfr13I	GGNCC	4 cut(s)	22, 242, 273, 289
Csp6I	GTAC	1 cut(s)	365
CviJI	RGCY	5 cut(s)	218, 244, 268, 291, 362
CviKI_1	RGCY	5 cut(s)	218, 244, 268, 291, 362
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	41, 374
DpnII	GATC	2 cut(s)	39, 372
DriI	GACNNNNNGTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	22, 273
Eco57I	CTGAAG	1 cut(s)	342
Eco72I	CACGTG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	24
FaqI	GGGAC	1 cut(s)	259
FauI	CCCGC	2 cut(s)	224, 284
Fnu4HI	GCNGC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	292
HaeIII	GGCC	3 cut(s)	218, 244, 291
HapII	CCGG	2 cut(s)	20, 187
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	7 cut(s)	8, 29, 53, 78, 174, 199, 236
HpaII	CCGG	2 cut(s)	20, 187
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	2 cut(s)	34, 52
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	39, 372
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	11, 33, 38, 188, 200, 213, 225, 256, 293
LweI	GCATC	1 cut(s)	347
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	41, 374
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	2 cut(s)	39, 372
MluCI	AATT	3 cut(s)	104, 127, 160
MlyI	GAGTC	5 cut(s)	23, 62, 87, 183, 208
MmeI	TCCRAC	2 cut(s)	30, 151
MnlI	CCTC	3 cut(s)	76, 172, 208
MseI	TTAA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	20, 187
MspR9I	CCNGG	2 cut(s)	20, 26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	294
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	2 cut(s)	39, 372
NlaIV	GGNNCC	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	8, 236
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	5 cut(s)	23, 61, 86, 182, 207
PmaCI	CACGTG	1 cut(s)	258
PmlI	CACGTG	1 cut(s)	258
PpsI	GAGTC	5 cut(s)	23, 61, 86, 182, 207
Ppu21I	YACGTR	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	22, 242, 273, 289
PspPPI	RGGWCCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	2 cut(s)	39, 372
Sau96I	GGNCC	4 cut(s)	22, 242, 273, 289
SchI	GAGTC	5 cut(s)	23, 62, 87, 183, 208
ScrFI	CCNGG	2 cut(s)	20, 26
SetI	ASST	5 cut(s)	183, 260, 270, 275, 364
SfaNI	GCATC	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	2 cut(s)	22, 273
Sse9I	AATT	3 cut(s)	104, 127, 160
SsiI	CCGC	5 cut(s)	37, 115, 231, 277, 292
StyD4I	CCNGG	2 cut(s)	18, 24
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	6 cut(s)	6, 11, 81, 177, 306, 375
TasI	AATT	3 cut(s)	104, 127, 160
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	8, 236
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	22, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.