Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298551.1

Orthogroup ID

OG0021264

Physical Location & Seq

Genomic Coordinates Reverse (-)

256 .. 847

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298551.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgttgaaatttcagattggtgatctgggattatcaaaaatcaagcagaggacactcatctctggtggcgtacgaggcaccgtaccatggatggccccagaacttttgaacagcaacagcaagaacaatttggtgacggaaaaggttgatgtatattcatttggaattgttatgtgggaactgttgactggggaggagccttacgcaaacttgcgctcagaggaaataatagttggtataatcaaaggcagtcttcgtcctgaaataccaagctggtgtgatccaacatggaaatcattgatggagaaatgttggtcatctgatccagaatctaggccgcccttctcagaaatctcaaaggagttgcgtgcaatgtctgctgctatgaacatcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PB1 Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

6.32

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021264)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g22680 pycom13g22920
rosa_multiflora	Rmu_co8298551.1_g000001
rosa_samantha	Rh5CG161900 Rh5CG185200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	2 cut(s)	275, 317
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	2 cut(s)	72, 84
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	7, 109
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
AlwI	GGATC	2 cut(s)	275, 317
AoxI	GGCC	2 cut(s)	93, 335
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	32, 145
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	85, 295
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	2 cut(s)	338, 381
BlsI	GCNGC	2 cut(s)	339, 382
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	79, 96, 198
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	231, 360
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	95, 337
BshNI	GGYRCC	1 cut(s)	77
BsiWI	CGTACG	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	87
BsnI	GGCC	2 cut(s)	95, 337
Bsp143I	GATC	3 cut(s)	22, 280, 322
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	95, 337
BspCNI	CTCAG	2 cut(s)	230, 359
BspLI	GGNNCC	3 cut(s)	79, 96, 198
BspPI	GGATC	2 cut(s)	275, 317
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	22, 280, 322
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	82, 183
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	217, 346
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	3 cut(s)	25, 283, 325
BstMBI	GATC	3 cut(s)	22, 280, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 377
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	95, 337
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	71, 83
CviAII	CATG	2 cut(s)	87, 288
CviJI	RGCY	4 cut(s)	95, 199, 273, 337
CviKI_1	RGCY	4 cut(s)	95, 199, 273, 337
CviQI	GTAC	2 cut(s)	71, 83
DdeI	CTNAG	2 cut(s)	217, 346
DpnI	GATC	3 cut(s)	24, 282, 324
DpnII	GATC	3 cut(s)	22, 280, 322
Eco130I	CCWWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	90, 291
FaiI	YATR	6 cut(s)	88, 154, 173, 239, 289, 386
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	2 cut(s)	86, 287
Fnu4HI	GCNGC	2 cut(s)	338, 381
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	338, 381
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	338, 381
HaeIII	GGCC	2 cut(s)	95, 337
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	90, 291
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	329
HphI	GGTGA	2 cut(s)	32, 145
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	4 cut(s)	15, 220, 322, 349
Hpy188III	TCNNGA	2 cut(s)	260, 326
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	82, 183
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 377
HpyF3I	CTNAG	2 cut(s)	217, 346
Hsp92II	CATG	2 cut(s)	90, 291
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	22, 280, 322
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	11, 48, 111, 174, 259, 273, 339
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	24, 282, 324
MboI	GATC	3 cut(s)	22, 280, 322
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	3 cut(s)	8, 127, 165
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	42, 68, 187, 214
MwoI	GCNNNNNNNGC	2 cut(s)	75, 377
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	22, 280, 322
NlaIII	CATG	2 cut(s)	90, 291
NlaIV	GGNNCC	3 cut(s)	79, 96, 198
NmuCI	GTSAC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	329
Pfl23II	CGTACG	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	339, 382
PspLI	CGTACG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	79, 96, 198
PspPI	GGNCC	1 cut(s)	94
RsaI	GTAC	2 cut(s)	72, 84
RsaNI	GTAC	2 cut(s)	71, 83
SatI	GCNGC	2 cut(s)	338, 381
Sau3AI	GATC	3 cut(s)	22, 280, 322
Sau96I	GGNCC	1 cut(s)	94
SetI	ASST	2 cut(s)	147, 275
Sse9I	AATT	3 cut(s)	8, 127, 165
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	82, 183
TasI	AATT	3 cut(s)	8, 127, 165
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	152
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.