PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom05g22680 pycom13g22920 |
| rosa_multiflora | Rmu_co8298551.1_g000001 |
| rosa_samantha | Rh5CG161900 Rh5CG185200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 114 |
| AclWI | GGATC | 1 cut(s) | 155 |
| AcoI | YGGCCR | 1 cut(s) | 19 |
| AjnI | CCWGG | 2 cut(s) | 21, 212 |
| AluBI | AGCT | 1 cut(s) | 266 |
| AluI | AGCT | 1 cut(s) | 266 |
| Alw26I | GTCTC | 1 cut(s) | 130 |
| AlwI | GGATC | 1 cut(s) | 155 |
| AoxI | GGCC | 2 cut(s) | 19, 215 |
| ApeKI | GCWGC | 2 cut(s) | 209, 263 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| BalI | TGGCCA | 1 cut(s) | 21 |
| BanII | GRGCYC | 1 cut(s) | 199 |
| BbvI | GCAGC | 2 cut(s) | 196, 275 |
| BccI | CCATC | 1 cut(s) | 226 |
| BceAI | ACGGC | 1 cut(s) | 64 |
| BciT130I | CCWGG | 2 cut(s) | 23, 214 |
| BcoDI | GTCTC | 1 cut(s) | 130 |
| BfaI | CTAG | 2 cut(s) | 237, 267 |
| BisI | GCNGC | 2 cut(s) | 210, 264 |
| BlsI | GCNGC | 2 cut(s) | 211, 265 |
| Bme1390I | CCNGG | 2 cut(s) | 23, 214 |
| BmiI | GGNNCC | 2 cut(s) | 78, 198 |
| BmrFI | CCNGG | 2 cut(s) | 23, 214 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 130 |
| BsaWI | WCCGGW | 1 cut(s) | 68 |
| BseBI | CCWGG | 2 cut(s) | 23, 214 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseXI | GCAGC | 2 cut(s) | 196, 275 |
| BshFI | GGCC | 2 cut(s) | 21, 217 |
| BsiSI | CCGG | 1 cut(s) | 69 |
| BsmAI | GTCTC | 1 cut(s) | 130 |
| BsnI | GGCC | 2 cut(s) | 21, 217 |
| Bso31I | GGTCTC | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 1 cut(s) | 199 |
| Bsp143I | GATC | 1 cut(s) | 160 |
| BspACI | CCGC | 1 cut(s) | 114 |
| BspANI | GGCC | 2 cut(s) | 21, 217 |
| BspLI | GGNNCC | 2 cut(s) | 78, 198 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 1 cut(s) | 155 |
| BspTNI | GGTCTC | 1 cut(s) | 130 |
| BssMI | GATC | 1 cut(s) | 160 |
| Bst2UI | CCWGG | 2 cut(s) | 23, 214 |
| Bst4CI | ACNGT | 1 cut(s) | 158 |
| BstC8I | GCNNGC | 2 cut(s) | 245, 268 |
| BstKTI | GATC | 1 cut(s) | 163 |
| BstMAI | GTCTC | 1 cut(s) | 130 |
| BstMBI | GATC | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 184 |
| BstNI | CCWGG | 2 cut(s) | 23, 214 |
| BstNSI | RCATGY | 1 cut(s) | 94 |
| BstSCI | CCNGG | 2 cut(s) | 21, 212 |
| BstV1I | GCAGC | 2 cut(s) | 196, 275 |
| BsuRI | GGCC | 2 cut(s) | 21, 217 |
| BtsI | GCAGTG | 1 cut(s) | 194 |
| BtsIMutI | CAGTG | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 2 cut(s) | 245, 268 |
| CviAII | CATG | 1 cut(s) | 91 |
| CviJI | RGCY | 6 cut(s) | 21, 79, 197, 217, 266, 270 |
| CviKI_1 | RGCY | 6 cut(s) | 21, 79, 197, 217, 266, 270 |
| DpnI | GATC | 1 cut(s) | 162 |
| DpnII | GATC | 1 cut(s) | 160 |
| EaeI | YGGCCR | 1 cut(s) | 19 |
| Eco24I | GRGCYC | 1 cut(s) | 199 |
| Eco31I | GGTCTC | 1 cut(s) | 130 |
| EcoRII | CCWGG | 2 cut(s) | 21, 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 199 |
| FaeI | CATG | 1 cut(s) | 94 |
| FaiI | YATR | 7 cut(s) | 55, 84, 92, 99, 110, 182, 254 |
| FatI | CATG | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 2 cut(s) | 210, 264 |
| FriOI | GRGCYC | 1 cut(s) | 199 |
| Fsp4HI | GCNGC | 2 cut(s) | 210, 264 |
| FspBI | CTAG | 2 cut(s) | 237, 267 |
| GluI | GCNGC | 2 cut(s) | 210, 264 |
| HaeIII | GGCC | 2 cut(s) | 21, 217 |
| HapII | CCGG | 1 cut(s) | 69 |
| Hin1II | CATG | 1 cut(s) | 94 |
| HinfI | GANTC | 1 cut(s) | 61 |
| HpaII | CCGG | 1 cut(s) | 69 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 225 |
| Hpy188III | TCNNGA | 1 cut(s) | 164 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 225 |
| HpyCH4III | ACNGT | 1 cut(s) | 158 |
| HpyCH4V | TGCA | 1 cut(s) | 94 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 184 |
| Hsp92II | CATG | 1 cut(s) | 94 |
| Kzo9I | GATC | 1 cut(s) | 160 |
| LmnI | GCTCC | 4 cut(s) | 76, 101, 184, 202 |
| LpnPI | CCDG | 9 cut(s) | 3, 8, 35, 82, 177, 199, 219, 226, 269 |
| Lsp1109I | GCAGC | 2 cut(s) | 196, 275 |
| MaeI | CTAG | 2 cut(s) | 237, 267 |
| MaeIII | GTNAC | 2 cut(s) | 152, 287 |
| MalI | GATC | 1 cut(s) | 162 |
| MboI | GATC | 1 cut(s) | 160 |
| MhlI | GDGCHC | 1 cut(s) | 199 |
| MlsI | TGGCCA | 1 cut(s) | 21 |
| MluCI | AATT | 2 cut(s) | 105, 231 |
| MluNI | TGGCCA | 1 cut(s) | 21 |
| MnlI | CCTC | 1 cut(s) | 67 |
| Mox20I | TGGCCA | 1 cut(s) | 21 |
| MscI | TGGCCA | 1 cut(s) | 21 |
| MslI | CAYNNNNRTG | 1 cut(s) | 301 |
| Msp20I | TGGCCA | 1 cut(s) | 21 |
| MspI | CCGG | 1 cut(s) | 69 |
| MspR9I | CCNGG | 2 cut(s) | 23, 214 |
| MvaI | CCWGG | 2 cut(s) | 23, 214 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 184 |
| NdeII | GATC | 1 cut(s) | 160 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NlaIII | CATG | 1 cut(s) | 94 |
| NlaIV | GGNNCC | 2 cut(s) | 78, 198 |
| NmuCI | GTSAC | 1 cut(s) | 287 |
| NspI | RCATGY | 1 cut(s) | 94 |
| PfeI | GAWTC | 1 cut(s) | 61 |
| PkrI | GCNGC | 2 cut(s) | 211, 265 |
| Psp6I | CCWGG | 2 cut(s) | 21, 212 |
| PspGI | CCWGG | 2 cut(s) | 21, 212 |
| PspN4I | GGNNCC | 2 cut(s) | 78, 198 |
| RseI | CAYNNNNRTG | 1 cut(s) | 301 |
| SatI | GCNGC | 2 cut(s) | 210, 264 |
| Sau3AI | GATC | 1 cut(s) | 160 |
| ScrFI | CCNGG | 2 cut(s) | 23, 214 |
| SduI | GDGCHC | 1 cut(s) | 199 |
| SetI | ASST | 2 cut(s) | 27, 268 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 301 |
| Sse9I | AATT | 2 cut(s) | 105, 231 |
| SsiI | CCGC | 1 cut(s) | 114 |
| SspMI | CTAG | 2 cut(s) | 237, 267 |
| StyD4I | CCNGG | 2 cut(s) | 21, 212 |
| TaaI | ACNGT | 1 cut(s) | 158 |
| TasI | AATT | 2 cut(s) | 105, 231 |
| TfiI | GAWTC | 1 cut(s) | 61 |
| TscAI | CASTG | 1 cut(s) | 194 |
| TseFI | GTSAC | 1 cut(s) | 287 |
| TseI | GCWGC | 2 cut(s) | 209, 263 |
| Tsp45I | GTSAC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 194 |
| XceI | RCATGY | 1 cut(s) | 94 |
| XspI | CTAG | 2 cut(s) | 237, 267 |