Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315289.1

Orthogroup ID

OG0017416

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 747

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315289.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

gtgggtatgacaaggaagagaaagctgctagggcatatgacttggctgcactaaagtactggggaacatccaccactacgaattttccaattagtaactacgagaaggaggtggaggagatgaagaactgtacaagacaggaatttgtggcctccattagaaggaaaagtagtggcttttcaagaggagcatccatgtatcgtggagttacaaggcatcatcagcacggccgatggcaggcaaggataggcagagttgccggaaacaaagacctttacctgggaactttcagtaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

98

Amino Acids

11.26

Weight (kDa)

9.88

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017416)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343331 RchiOBHm_Chr4g0394121
rosa_laevigata	RLG00000003214 RLG00000034806
rosa_multiflora	Rmu_co8315289.1_g000001 Rmu_sc0002798.1_g000006 Rmu_sc0012628.1_g000012
rosa_rugosa	Rorug05G0063400 Rorug05G0365300
rosa_samantha	Rh4CG140100 Rh5DG178000 Rh6AG080800 Rh6CG182000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	81, 142
AfaI	GTAC	2 cut(s)	58, 132
AfiI	CCNNNNNNNGG	3 cut(s)	161, 237, 279
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AoxI	GGCC	2 cut(s)	149, 228
ApeKI	GCWGC	2 cut(s)	25, 46
ApoI	RAATTY	2 cut(s)	81, 142
BbvI	GCAGC	2 cut(s)	12, 33
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	280
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	26, 47
BlsI	GCNGC	2 cut(s)	27, 48
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	199, 225
BmuI	ACTGGG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 237, 279
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	67, 190
BseLI	CCNNNNNNNGG	3 cut(s)	161, 237, 279
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	130, 200
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	12, 33
BsgI	GTGCAG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	151, 230
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	161, 237, 279
BsnI	GGCC	2 cut(s)	151, 230
Bsp1407I	TGTACA	1 cut(s)	130
BspANI	GGCC	2 cut(s)	151, 230
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	67, 190
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 222
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	12, 33
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	151, 230
BtsCI	GGATG	2 cut(s)	67, 190
Cac8I	GCNNGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	57, 131
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	5 cut(s)	25, 46, 151, 176, 230
CviKI_1	RGCY	5 cut(s)	25, 46, 151, 176, 230
CviQI	GTAC	2 cut(s)	57, 131
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	198
FaiI	YATR	4 cut(s)	8, 36, 38, 196
FatI	CATG	1 cut(s)	194
FauNDI	CATATG	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	26, 47
FokI	GGATG	2 cut(s)	54, 177
Fsp4HI	GCNGC	2 cut(s)	26, 47
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	26, 47
HaeIII	GGCC	2 cut(s)	151, 230
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	1 cut(s)	198
HpaII	CCGG	1 cut(s)	260
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	99, 155
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 222
Hsp92II	CATG	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	45, 124, 223, 265, 273, 292
Lsp1109I	GCAGC	2 cut(s)	12, 33
LweI	GCATC	2 cut(s)	199, 225
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	94, 207
MboII	GAAGA	2 cut(s)	28, 135
MluCI	AATT	3 cut(s)	81, 89, 142
MnlI	CCTC	4 cut(s)	102, 108, 162, 178
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	31, 222
NdeI	CATATG	1 cut(s)	36
NlaIII	CATG	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	27, 48
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	58, 132
RsaNI	GTAC	2 cut(s)	57, 131
SatI	GCNGC	2 cut(s)	26, 47
ScaI	AGTACT	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	4 cut(s)	27, 113, 275, 281
SfaNI	GCATC	2 cut(s)	199, 225
Sse9I	AATT	3 cut(s)	81, 89, 142
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	3 cut(s)	81, 89, 142
TatI	WGTACW	2 cut(s)	56, 130
TseI	GCWGC	2 cut(s)	25, 46
TspDTI	ATGAA	1 cut(s)	136
XapI	RAATTY	2 cut(s)	81, 142
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.