Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017416

Physical Location & Seq

Genomic Coordinates Forward (+)

29139682 .. 29159300

Gene Structure 19619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGATGTGCGTCAGATGCAACTGGTGCAGAGTTGATCGGTGGTCGGAAGGTGAAGTTACGGCCGGATTTGGGTTTAGGGTAAGTCTTGATCACATCTGGGTGCTTTTGATCTCATCTCAATCGCTCCAACTGCAGTTTATTTGGGTGGTTATGACAATTGACAAAGAAGACAAAGCGGCTAGAGCTTATGACTTAGCAGCATTGAAATATTGGGGCACCAGTCCCACAACCACTACCAACTTCCCGATGAGTGCATATATGATATATTCTGGTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

94

Amino Acids

10.79

Weight (kDa)

7.71

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017416)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343331 RchiOBHm_Chr4g0394121
rosa_laevigata	RLG00000003214 RLG00000034806
rosa_multiflora	Rmu_co8315289.1_g000001 Rmu_sc0002798.1_g000006 Rmu_sc0012628.1_g000012
rosa_rugosa	Rorug05G0063400 Rorug05G0365300
rosa_samantha	Rh4CG140100 Rh5DG178000 Rh6AG080800 Rh6CG182000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	91
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	180, 201
BlsI	GCNGC	2 cut(s)	181, 202
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	29, 222
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	29, 222
BseSI	GKGCMC	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	37, 91, 111
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	29, 222
BssMI	GATC	3 cut(s)	37, 91, 111
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	196
BstKTI	GATC	3 cut(s)	40, 94, 114
BstMBI	GATC	3 cut(s)	37, 91, 111
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 27, 133, 185
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	65
CviJI	RGCY	3 cut(s)	65, 182, 188
CviKI_1	RGCY	3 cut(s)	65, 182, 188
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	39, 93, 113
DpnII	GATC	3 cut(s)	37, 91, 111
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	63
Eco52I	CGGCCG	1 cut(s)	63
FaiI	YATR	6 cut(s)	155, 192, 259, 261, 263, 268
FaqI	GGGAC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	180, 201
Fsp4HI	GCNGC	2 cut(s)	180, 201
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	180, 201
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	66
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	17, 49
Hpy188III	TCNNGA	2 cut(s)	89, 247
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	21, 30, 136, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 27, 133, 185
HpyF3I	CTNAG	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	37, 91, 111
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	10, 79, 85, 235, 258
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	39, 93, 113
MboI	GATC	3 cut(s)	37, 91, 111
MboII	GAAGA	2 cut(s)	16, 182
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	27, 154
MseI	TTAA	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	66
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	18, 27, 133, 185
NdeII	GATC	3 cut(s)	37, 91, 111
NlaIV	GGNNCC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	181, 202
PspN4I	GGNNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	283
SatI	GCNGC	2 cut(s)	180, 201
Sau3AI	GATC	3 cut(s)	37, 91, 111
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	2 cut(s)	55, 190
SfaNI	GCATC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	134
SgeI	CNNG	7 cut(s)	37, 78, 101, 112, 195, 234, 259
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	179
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	183
TasI	AATT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.