Transcription factor DYSFUNCTIONAL TAPETUM
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0343331 RchiOBHm_Chr4g0394121 |
| rosa_laevigata | RLG00000003214 RLG00000034806 |
| rosa_multiflora | Rmu_co8315289.1_g000001 Rmu_sc0002798.1_g000006 Rmu_sc0012628.1_g000012 |
| rosa_rugosa | Rorug05G0063400 Rorug05G0365300 |
| rosa_samantha | Rh4CG140100 Rh5DG178000 Rh6AG080800 Rh6CG182000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 191 |
| AciI | CCGC | 1 cut(s) | 152 |
| AgsI | TTSAA | 2 cut(s) | 20, 181 |
| AluBI | AGCT | 1 cut(s) | 161 |
| AluI | AGCT | 1 cut(s) | 161 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| BaeGI | GKGCMC | 1 cut(s) | 194 |
| BanI | GGYRCC | 1 cut(s) | 191 |
| BbsI | GAAGAC | 2 cut(s) | 74, 150 |
| BbvI | GCAGC | 1 cut(s) | 185 |
| BccI | CCATC | 1 cut(s) | 41 |
| BclI | TGATCA | 1 cut(s) | 247 |
| BfaI | CTAG | 1 cut(s) | 156 |
| BisI | GCNGC | 2 cut(s) | 153, 174 |
| BlsI | GCNGC | 2 cut(s) | 154, 175 |
| BmiI | GGNNCC | 1 cut(s) | 193 |
| BpiI | GAAGAC | 2 cut(s) | 74, 150 |
| Bse1I | ACTGG | 2 cut(s) | 111, 195 |
| Bse3DI | GCAATG | 1 cut(s) | 123 |
| BseMI | GCAATG | 1 cut(s) | 123 |
| BseMII | CTCAG | 1 cut(s) | 53 |
| BseNI | ACTGG | 2 cut(s) | 111, 195 |
| BseSI | GKGCMC | 1 cut(s) | 194 |
| BseXI | GCAGC | 1 cut(s) | 185 |
| BshNI | GGYRCC | 1 cut(s) | 191 |
| BslFI | GGGAC | 1 cut(s) | 183 |
| BsmFI | GGGAC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 194 |
| Bsp143I | GATC | 1 cut(s) | 247 |
| BspACI | CCGC | 1 cut(s) | 152 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspLI | GGNNCC | 1 cut(s) | 193 |
| BspT107I | GGYRCC | 1 cut(s) | 191 |
| BsrDI | GCAATG | 1 cut(s) | 123 |
| BsrI | ACTGG | 2 cut(s) | 111, 195 |
| BssMI | GATC | 1 cut(s) | 247 |
| BstDEI | CTNAG | 3 cut(s) | 39, 59, 169 |
| BstKTI | GATC | 1 cut(s) | 250 |
| BstMBI | GATC | 1 cut(s) | 247 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 158 |
| BstSLI | GKGCMC | 1 cut(s) | 194 |
| BstV1I | GCAGC | 1 cut(s) | 185 |
| BstV2I | GAAGAC | 2 cut(s) | 74, 150 |
| CviJI | RGCY | 4 cut(s) | 38, 96, 155, 161 |
| CviKI_1 | RGCY | 4 cut(s) | 38, 96, 155, 161 |
| DdeI | CTNAG | 3 cut(s) | 39, 59, 169 |
| DpnI | GATC | 1 cut(s) | 249 |
| DpnII | GATC | 1 cut(s) | 247 |
| FaiI | YATR | 7 cut(s) | 35, 128, 165, 232, 234, 236, 241 |
| FaqI | GGGAC | 1 cut(s) | 183 |
| FbaI | TGATCA | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 2 cut(s) | 153, 174 |
| Fsp4HI | GCNGC | 2 cut(s) | 153, 174 |
| FspBI | CTAG | 1 cut(s) | 156 |
| GluI | GCNGC | 2 cut(s) | 153, 174 |
| HinfI | GANTC | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 2 cut(s) | 42, 247 |
| Hpy188III | TCNNGA | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 1 cut(s) | 230 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 158 |
| HpyF3I | CTNAG | 3 cut(s) | 39, 59, 169 |
| Ksp22I | TGATCA | 1 cut(s) | 247 |
| Kzo9I | GATC | 1 cut(s) | 247 |
| LpnPI | CCDG | 2 cut(s) | 92, 208 |
| Lsp1109I | GCAGC | 1 cut(s) | 185 |
| MaeI | CTAG | 1 cut(s) | 156 |
| MalI | GATC | 1 cut(s) | 249 |
| MboI | GATC | 1 cut(s) | 247 |
| MboII | GAAGA | 3 cut(s) | 16, 79, 155 |
| MfeI | CAATTG | 1 cut(s) | 132 |
| MhlI | GDGCHC | 1 cut(s) | 194 |
| MluCI | AATT | 1 cut(s) | 132 |
| MnlI | CCTC | 3 cut(s) | 75, 83, 106 |
| MunI | CAATTG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 158 |
| NdeII | GATC | 1 cut(s) | 247 |
| NlaIV | GGNNCC | 1 cut(s) | 193 |
| PfeI | GAWTC | 1 cut(s) | 16 |
| PkrI | GCNGC | 2 cut(s) | 154, 175 |
| PspN4I | GGNNCC | 1 cut(s) | 193 |
| SatI | GCNGC | 2 cut(s) | 153, 174 |
| Sau3AI | GATC | 1 cut(s) | 247 |
| SduI | GDGCHC | 1 cut(s) | 194 |
| SetI | ASST | 2 cut(s) | 94, 163 |
| SgeI | CNNG | 4 cut(s) | 119, 168, 207, 232 |
| Sse9I | AATT | 1 cut(s) | 132 |
| SsiI | CCGC | 1 cut(s) | 152 |
| SspI | AATATT | 1 cut(s) | 185 |
| SspMI | CTAG | 1 cut(s) | 156 |
| TasI | AATT | 1 cut(s) | 132 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 1 cut(s) | 16 |
| TseI | GCWGC | 1 cut(s) | 173 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 156 |