Rorug05G0365300

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
48664035 .. 48666361
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0365300.1

Sequence Viewer

Length: 1251 bp
ATGGGGTTTGCAGCCGAGGGCCGTGGAAGCTGCAAGAGTGGAAAAATGGACAATGTTTACGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCGGTCAATATCCCGGAACCCGTCCTTCGGGCAATGAACAGAAACAATGAGGACTATCGTTCTCCAGCTGTTCCAGCAATGACAAAAGTCCTGCTCGAGGATGTCAAGAAGATTTTCAAGACTACTACCGGAACTCCATTTATGTTCCCTACCACAGGTACTGGTGCATGGGAGAGTGCACTTACAAATACATTGTCCCCTGGAGATCGGATTGTATCTTTCCTGATTGGCCAGTTCAGTTTGCTGTGGATTGATCAGCAGCAGCGCCTTAATTTCAAGGTCGATGTTGTGGAAAGTGACTGGGGCCAAGGTGCCAACCTTGAAATTCTGGCATCGAAAATTGCCGAAGACACTGCGCACACTATAAAGGCAGTATGCATTGTTCACAATGAAACGGCAACTGGAGTTACCAATAACTTGGCTACAGTGAGAAAAATACTTGACCACTACAGGCATCCGGCTCTCTTTCTTGTTGATGGAGTGTCTTCCATATGTGCTCTGGATTTCCGTATGGATGAATGGGGAGTAGATGTAGCCTTAACTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTCTGTGCAAGCCCCAAAGCTCTCGAGGCATCCAAAACCGCAAAGTCAGTAAGAGTTTTCTTTGACTGGAATGATTACTTGAAGTTCTATAAGCTGGGCACATATTGGCCATACACACCTTCCATTCAGTTGCTATATGGGCTGCGAGCAGCTCTTGATCTTCTGTTTGAGGAAGGACTTGACAATGTGATTGCAAGACATAGCCGTTTGGGCAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGCTTGAAGAACTGCACCCAAAAAGAAGAATGGGTAAGTGACACAGTGACTGCTGTTCTTGTTCCTCCATACATTGACAGTACAGAAATTGTGAGAAGGGCATGGAAAAGGTACAATCTGAGTTTAGGCCTTGGCCTGAACAAAATTGCTGGCAAGGTTTTCAGAATAGGGCATCTTGGCAATCTGAATGAGTTGCAATTGTTGGGTTGTCTTGCTGGGGTTGAGATGGTGCTTAGGGACGTGGGCTACCCGGTTAAGCTAGGAAGTGGAGTAGCAGCTGCTTCTGCATACTTGCAGAACAACATTCCTCTCATCCCTTCCAGGGTTTGA

Protein Analysis

416

Amino Acids

45.62

Weight (kDa)

8.75

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 64 - 306 8.2e-23 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 1 cut(s) 717
AcoI YGGCCR 2 cut(s) 322, 785
AcsI RAATTY 1 cut(s) 417
AfaI GTAC 3 cut(s) 253, 1003, 1034
AfiI CCNNNNNNNGG 4 cut(s) 120, 190, 248, 1243
AgsI TTSAA 5 cut(s) 211, 370, 416, 760, 928
AjiI CACGTC 1 cut(s) 1162
AjnI CCWGG 4 cut(s) 64, 88, 292, 1241
AluBI AGCT 8 cut(s) 30, 161, 650, 698, 772, 830, 1180, 1199
AluI AGCT 8 cut(s) 30, 161, 650, 698, 772, 830, 1180, 1199
Alw21I GWGCWC 2 cut(s) 274, 592
Alw44I GTGCAC 1 cut(s) 270
AlwNI CAGNNNCTG 2 cut(s) 254, 971
Ama87I CYCGRG 2 cut(s) 188, 701
AoxI GGCC 7 cut(s) 19, 92, 322, 397, 785, 1048, 1054
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 8 cut(s) 11, 30, 352, 355, 820, 827, 1196, 1199
ApoI RAATTY 1 cut(s) 417
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 360, 451
AspS9I GGNCC 3 cut(s) 19, 92, 397
AsuC2I CCSGG 2 cut(s) 107, 1172
AvaI CYCGRG 2 cut(s) 188, 701
BaeGI GKGCMC 2 cut(s) 274, 779
BalI TGGCCA 2 cut(s) 324, 787
BanI GGYRCC 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 447, 570
Bbv12I GWGCWC 2 cut(s) 274, 592
BbvI GCAGC 8 cut(s) 17, 23, 364, 367, 807, 839, 1186, 1208
BccI CCATC 3 cut(s) 84, 563, 1141
BceAI ACGGC 3 cut(s) 6, 504, 867
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 4 cut(s) 66, 90, 294, 1243
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 2 cut(s) 107, 1172
BfaI CTAG 1 cut(s) 1181
BfmI CTRYAG 2 cut(s) 516, 541
BfoI RGCGCY 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 888
BisI GCNGC 8 cut(s) 12, 31, 353, 356, 821, 828, 1197, 1200
BlsI GCNGC 8 cut(s) 13, 32, 354, 357, 822, 829, 1198, 1201
Bme1390I CCNGG 6 cut(s) 66, 90, 107, 294, 1172, 1243
BmeT110I CYCGRG 2 cut(s) 188, 701
BmgBI CACGTC 1 cut(s) 1162
BmgT120I GGNCC 3 cut(s) 19, 92, 397
BmiI GGNNCC 5 cut(s) 74, 111, 398, 406, 640
BmrFI CCNGG 6 cut(s) 66, 90, 107, 294, 1172, 1243
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 4 cut(s) 434, 556, 716, 1102
BmuI ACTGGG 1 cut(s) 403
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 2 cut(s) 447, 570
BpmI CTGGAG 3 cut(s) 141, 315, 516
Bpu10I CCTNAGC 1 cut(s) 1154
BpuMI CCSGG 2 cut(s) 107, 1172
BsaJI CCNNGG 7 cut(s) 15, 22, 89, 292, 400, 1051, 1242
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 609, 639
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 190, 248, 1243
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 7 cut(s) 259, 325, 398, 499, 640, 670, 749
Bse3DI GCAATG 2 cut(s) 132, 177
BseBI CCWGG 4 cut(s) 66, 90, 294, 1243
BseDI CCNNGG 7 cut(s) 15, 22, 89, 292, 400, 1051, 1242
BseGI GGATG 5 cut(s) 199, 547, 613, 707, 1233
BseLI CCNNNNNNNGG 4 cut(s) 120, 190, 248, 1243
BseMI GCAATG 2 cut(s) 132, 177
BseMII CTCAG 1 cut(s) 1031
BseNI ACTGG 7 cut(s) 259, 325, 398, 499, 640, 670, 749
BseSI GKGCMC 2 cut(s) 274, 779
BseXI GCAGC 8 cut(s) 17, 23, 364, 367, 807, 839, 1186, 1208
BseYI CCCAGC 2 cut(s) 772, 1136
BsgI GTGCAG 1 cut(s) 919
BshFI GGCC 7 cut(s) 21, 94, 324, 399, 787, 1050, 1056
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 274, 592
BsiHKCI CYCGRG 2 cut(s) 188, 701
BsiSI CCGG 5 cut(s) 95, 107, 222, 551, 1172
BslFI GGGAC 2 cut(s) 274, 1172
BslI CCNNNNNNNGG 4 cut(s) 120, 190, 248, 1243
BsmFI GGGAC 2 cut(s) 274, 1172
BsnI GGCC 7 cut(s) 21, 94, 324, 399, 787, 1050, 1056
BsoBI CYCGRG 2 cut(s) 188, 701
Bsp1286I GDGCHC 3 cut(s) 274, 592, 779
Bsp143I GATC 3 cut(s) 298, 346, 835
BspACI CCGC 1 cut(s) 717
BspANI GGCC 7 cut(s) 21, 94, 324, 399, 787, 1050, 1056
BspCNI CTCAG 1 cut(s) 1032
BspLI GGNNCC 5 cut(s) 74, 111, 398, 406, 640
BspT107I GGYRCC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 132, 177
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 7 cut(s) 259, 325, 398, 499, 640, 670, 749
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 7 cut(s) 15, 22, 89, 292, 400, 1051, 1242
BssMI GATC 3 cut(s) 298, 346, 835
BssT1I CCWWGG 2 cut(s) 400, 1051
Bst2UI CCWGG 4 cut(s) 66, 90, 294, 1243
Bst4CI ACNGT 3 cut(s) 520, 967, 1001
BstC8I GCNNGC 4 cut(s) 688, 825, 906, 1072
BstDEI CTNAG 2 cut(s) 1040, 1154
BstDSI CCRYGG 1 cut(s) 22
BstENI CCTNNNNNAGG 2 cut(s) 188, 246
BstF5I GGATG 5 cut(s) 199, 547, 613, 707, 1233
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 360, 451
BstKTI GATC 3 cut(s) 301, 349, 838
BstMBI GATC 3 cut(s) 298, 346, 835
BstMWI GCNNNNNNNGC 7 cut(s) 27, 167, 704, 817, 888, 914, 1205
BstNI CCWGG 4 cut(s) 66, 90, 294, 1243
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 6 cut(s) 64, 88, 105, 292, 1170, 1241
BstSFI CTRYAG 2 cut(s) 516, 541
BstSLI GKGCMC 2 cut(s) 274, 779
BstV1I GCAGC 8 cut(s) 17, 23, 364, 367, 807, 839, 1186, 1208
BstV2I GAAGAC 2 cut(s) 447, 570
BstXI CCANNNNNNTGG 1 cut(s) 511
BsuRI GGCC 7 cut(s) 21, 94, 324, 399, 787, 1050, 1056
BtgI CCRYGG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 1162
BtsCI GGATG 5 cut(s) 199, 547, 613, 707, 1233
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 4 cut(s) 444, 525, 663, 972
Cac8I GCNNGC 4 cut(s) 688, 825, 906, 1072
CaiI CAGNNNCTG 2 cut(s) 254, 971
CfoI GCGC 2 cut(s) 360, 451
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 19, 92, 397
Csp6I GTAC 3 cut(s) 252, 1002, 1033
CviAII CATG 3 cut(s) 261, 918, 1023
CviQI GTAC 3 cut(s) 252, 1002, 1033
DdeI CTNAG 2 cut(s) 1040, 1154
DpnI GATC 3 cut(s) 300, 348, 837
DpnII GATC 3 cut(s) 298, 346, 835
EaeI YGGCCR 2 cut(s) 322, 785
Eco130I CCWWGG 2 cut(s) 400, 1051
Eco147I AGGCCT 1 cut(s) 1050
Eco88I CYCGRG 2 cut(s) 188, 701
EcoNI CCTNNNNNAGG 2 cut(s) 188, 246
EcoRII CCWGG 4 cut(s) 64, 88, 292, 1241
EcoT14I CCWWGG 2 cut(s) 400, 1051
EcoT22I ATGCAT 1 cut(s) 473
ErhI CCWWGG 2 cut(s) 400, 1051
FaeI CATG 3 cut(s) 264, 921, 1026
FaqI GGGAC 2 cut(s) 274, 1172
FatI CATG 3 cut(s) 260, 917, 1022
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 8 cut(s) 12, 31, 353, 356, 821, 828, 1197, 1200
FokI GGATG 5 cut(s) 206, 534, 620, 694, 1220
Fsp4HI GCNGC 8 cut(s) 12, 31, 353, 356, 821, 828, 1197, 1200
FspBI CTAG 1 cut(s) 1181
FspI TGCGCA 1 cut(s) 450
GlaI GCGC 2 cut(s) 359, 450
GluI GCNGC 8 cut(s) 12, 31, 353, 356, 821, 828, 1197, 1200
GsaI CCCAGC 2 cut(s) 776, 1140
GsuI CTGGAG 3 cut(s) 141, 315, 516
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 7 cut(s) 21, 94, 324, 399, 787, 1050, 1056
HapII CCGG 5 cut(s) 95, 107, 222, 551, 1172
HhaI GCGC 2 cut(s) 360, 451
Hin1II CATG 3 cut(s) 264, 921, 1026
Hin6I GCGC 2 cut(s) 358, 449
HinP1I GCGC 2 cut(s) 358, 449
HpaII CCGG 5 cut(s) 95, 107, 222, 551, 1172
Hpy166II GTNNAC 3 cut(s) 58, 272, 478
Hpy188I TCNGA 4 cut(s) 303, 1041, 1085, 1107
Hpy188III TCNNGA 6 cut(s) 199, 211, 316, 593, 701, 833
Hpy8I GTNNAC 3 cut(s) 58, 272, 478
HpyAV CCTTC 7 cut(s) 63, 128, 668, 807, 845, 1011, 1248
HpyCH4III ACNGT 3 cut(s) 520, 967, 1001
HpyCH4IV ACGT 1 cut(s) 1161
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 167, 704, 817, 888, 914, 1205
HpyF3I CTNAG 2 cut(s) 1040, 1154
HpySE526I ACGT 1 cut(s) 1161
Hsp92II CATG 3 cut(s) 264, 921, 1026
HspAI GCGC 2 cut(s) 358, 449
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 298, 346, 835
LmnI GCTCC 1 cut(s) 644
Lsp1109I GCAGC 8 cut(s) 17, 23, 364, 367, 807, 839, 1186, 1208
LweI GCATC 4 cut(s) 434, 556, 716, 1102
MaeI CTAG 1 cut(s) 1181
MaeII ACGT 1 cut(s) 1161
MaeIII GTNAC 4 cut(s) 389, 499, 959, 967
MalI GATC 3 cut(s) 300, 348, 837
MboI GATC 3 cut(s) 298, 346, 835
MboII GAAGA 6 cut(s) 214, 452, 570, 830, 940, 959
MfeI CAATTG 1 cut(s) 1118
MhlI GDGCHC 3 cut(s) 274, 592, 779
MlsI TGGCCA 2 cut(s) 324, 787
MluCI AATT 6 cut(s) 364, 417, 432, 1008, 1065, 1118
MluNI TGGCCA 2 cut(s) 324, 787
MnlI CCTC 8 cut(s) 10, 136, 184, 697, 841, 907, 996, 1239
Mox20I TGGCCA 2 cut(s) 324, 787
Mph1103I ATGCAT 1 cut(s) 473
MroXI GAANNNNTTC 1 cut(s) 206
MscI TGGCCA 2 cut(s) 324, 787
MseI TTAA 3 cut(s) 363, 632, 1176
Msp20I TGGCCA 2 cut(s) 324, 787
MspA1I CMGCKG 2 cut(s) 161, 1199
MspI CCGG 5 cut(s) 95, 107, 222, 551, 1172
MspR9I CCNGG 6 cut(s) 66, 90, 107, 294, 1172, 1243
MunI CAATTG 1 cut(s) 1118
MvaI CCWGG 4 cut(s) 66, 90, 294, 1243
MwoI GCNNNNNNNGC 7 cut(s) 27, 167, 704, 817, 888, 914, 1205
NciI CCSGG 2 cut(s) 107, 1172
NdeI CATATG 1 cut(s) 584
NdeII GATC 3 cut(s) 298, 346, 835
NlaIII CATG 3 cut(s) 264, 921, 1026
NlaIV GGNNCC 5 cut(s) 74, 111, 398, 406, 640
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 3 cut(s) 389, 959, 967
NsbI TGCGCA 1 cut(s) 450
NsiI ATGCAT 1 cut(s) 473
PaeR7I CTCGAG 2 cut(s) 188, 701
PceI AGGCCT 1 cut(s) 1050
PdmI GAANNNNTTC 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 8 cut(s) 13, 32, 354, 357, 822, 829, 1198, 1201
PshAI GACNNNNGTC 1 cut(s) 179
Psp6I CCWGG 4 cut(s) 64, 88, 292, 1241
PspFI CCCAGC 2 cut(s) 772, 1136
PspGI CCWGG 4 cut(s) 64, 88, 292, 1241
PspN4I GGNNCC 5 cut(s) 74, 111, 398, 406, 640
PspPI GGNCC 3 cut(s) 19, 92, 397
PspXI VCTCGAGB 1 cut(s) 188
PsrI GAACNNNNNNTAC 2 cut(s) 459, 491
PstNI CAGNNNCTG 2 cut(s) 254, 971
PvuII CAGCTG 2 cut(s) 161, 1199
RsaI GTAC 3 cut(s) 253, 1003, 1034
RsaNI GTAC 3 cut(s) 252, 1002, 1033
SaqAI TTAA 3 cut(s) 363, 632, 1176
SatI GCNGC 8 cut(s) 12, 31, 353, 356, 821, 828, 1197, 1200
Sau3AI GATC 3 cut(s) 298, 346, 835
Sau96I GGNCC 3 cut(s) 19, 92, 397
ScrFI CCNGG 6 cut(s) 66, 90, 107, 294, 1172, 1243
SduI GDGCHC 3 cut(s) 274, 592, 779
SfaNI GCATC 4 cut(s) 434, 556, 716, 1102
SfcI CTRYAG 2 cut(s) 516, 541
Sfr274I CTCGAG 2 cut(s) 188, 701
SlaI CTCGAG 2 cut(s) 188, 701
SmlI CTYRAG 2 cut(s) 188, 701
SmoI CTYRAG 2 cut(s) 188, 701
Sse9I AATT 6 cut(s) 364, 417, 432, 1008, 1065, 1118
SseBI AGGCCT 1 cut(s) 1050
SsiI CCGC 1 cut(s) 717
SspMI CTAG 1 cut(s) 1181
StuI AGGCCT 1 cut(s) 1050
StyD4I CCNGG 6 cut(s) 64, 88, 105, 292, 1170, 1241
StyI CCWWGG 2 cut(s) 400, 1051
TaaI ACNGT 3 cut(s) 520, 967, 1001
TaiI ACGT 1 cut(s) 1164
TaqI TCGA 4 cut(s) 189, 375, 428, 702
TasI AATT 6 cut(s) 364, 417, 432, 1008, 1065, 1118
TatI WGTACW 1 cut(s) 1001
Tru1I TTAA 3 cut(s) 363, 632, 1176
Tru9I TTAA 3 cut(s) 363, 632, 1176
TscAI CASTG 4 cut(s) 451, 525, 670, 972
TseFI GTSAC 3 cut(s) 389, 959, 967
TseI GCWGC 8 cut(s) 11, 30, 352, 355, 820, 827, 1196, 1199
Tsp45I GTSAC 3 cut(s) 389, 959, 967
TspDTI ATGAA 3 cut(s) 143, 498, 624
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 4 cut(s) 451, 525, 670, 972
VneI GTGCAC 1 cut(s) 270
XagI CCTNNNNNAGG 2 cut(s) 188, 246
XapI RAATTY 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XhoI CTCGAG 2 cut(s) 188, 701
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 1181
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.