Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017416

Physical Location & Seq

Genomic Coordinates Forward (+)

5519359 .. 5520080

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCTTGATGAGTTAACAGCAACAGTTGAATTGGGGAATGGCTTTATTGGAGATGGCTTTTCTTGGCGTGTCACCCTCGCTTGTGGCTGCGAGTTGAATGATCCATTGGAGCCTGGCGTCTTCCCCAGTATTGAGACAGCGGTTGCTGCCGCAAGGCTTGGTGACACCATTCTAATTTCAGCAGGGGGAAAGCATCTTGCTTCTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

70

Amino Acids

7.21

Weight (kDa)

4.1

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017416)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343331 RchiOBHm_Chr4g0394121
rosa_laevigata	RLG00000003214 RLG00000034806
rosa_multiflora	Rmu_co8315289.1_g000001 Rmu_sc0002798.1_g000006 Rmu_sc0012628.1_g000012
rosa_rugosa	Rorug05G0063400 Rorug05G0365300
rosa_samantha	Rh4CG140100 Rh5DG178000 Rh6AG080800 Rh6CG182000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	140, 150
AclWI	GGATC	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	29, 97
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	87, 146
AsuHPI	GGTGA	2 cut(s)	64, 173
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	74, 133
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	88, 147, 150
BlsI	GCNGC	3 cut(s)	89, 148, 151
Bme1390I	CCNGG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	74, 133
BsmAI	GTCTC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	140, 150
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	74, 133
BstV2I	GAAGAC	1 cut(s)	112
CseI	GACGC	1 cut(s)	106
CviJI	RGCY	5 cut(s)	42, 57, 87, 112, 157
CviKI_1	RGCY	5 cut(s)	42, 57, 87, 112, 157
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	88, 147, 150
Fsp4HI	GCNGC	3 cut(s)	88, 147, 150
GluI	GCNGC	3 cut(s)	88, 147, 150
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HpaI	GTTAAC	1 cut(s)	15
HphI	GGTGA	2 cut(s)	64, 173
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	117
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	4 cut(s)	99, 126, 139, 168
Lsp1109I	GCAGC	2 cut(s)	74, 133
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	70, 161
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	2 cut(s)	29, 174
MnlI	CCTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	14, 211
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	70, 161
PkrI	GCNGC	3 cut(s)	89, 148, 151
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	14, 211
SatI	GCNGC	3 cut(s)	88, 147, 150
Sau3AI	GATC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	29, 174
SsiI	CCGC	2 cut(s)	140, 150
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	2 cut(s)	29, 174
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	14, 211
Tru9I	TTAA	2 cut(s)	14, 211
TseFI	GTSAC	2 cut(s)	70, 161
TseI	GCWGC	2 cut(s)	87, 146
Tsp45I	GTSAC	2 cut(s)	70, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.