Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8318215.1

Orthogroup ID

OG0007473

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 640

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8318215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

tcaacaatgctgacatagttcagcattctgacaaggttgagcatcatgttgccagggttgaaaatcatgttccaagggctgaacatctctctccaaagcctgatagagttcctgggcattccaatcctactcgccaccctgataaagctgagaatcatccttttgatcagagaactggaaagaaatttgataggagggataatcaagttgagagagtagatatgcagaggaggaattggcgtaatgatgggaggaagaacaacagagagactgataggcagccgcaacagtcagaaaggccaccatcaccagagacctggcggaagcctgaacagccaaaaccatcatctcctgatggtgctggcctgcatcacggaaaagcagcttcagctcttgagcttgcgcaagcattttccagatcagtctcagatccaaaattaaacgatcgaatttctggccaaaggggaattcctagccgcggtcaaatacctttttcacggttgatgggcccgagtccaaggcctcagataaatggttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-4B

Protein Analysis

179

Amino Acids

20.41

Weight (kDa)

10.34

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11480 AT1G11480
fragaria_vesca	FvH4_3g03030 FvH4_3g03030 FvH4_3g03030
malus_domestica	MD05G1335400.v1.1 MD10G1310800.v1.1
prunus_persica	Prupe.4G030000_v2.0.a1 Prupe.4G030000_v2.0.a1 Prupe.4G030000_v2.0.a1
pyrus_communis	pycom05g30680 pycom10g26180
rosa_chinensis	RchiOBHm_Chr5g0004671 RchiOBHm_Chr5g0004681
rosa_laevigata	RLG00000031251
rosa_multiflora	Rmu_co8318215.1_g000001 Rmu_sc0002210.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070880
rosa_rugosa	Rorug04G0413200
rosa_samantha	Rh5AG040800 Rh5BG040500 Rh5BG040700 Rh5CG044300 Rh5DG040500
rosa_wichuraiana	Rw5G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	404
AccII	CGCG	1 cut(s)	479
AciI	CCGC	4 cut(s)	283, 321, 477, 479
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	3 cut(s)	184, 449, 467
AcuI	CTGAAG	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	52, 111, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	148, 385, 391, 399
AluI	AGCT	4 cut(s)	148, 385, 391, 399
Alw26I	GTCTC	3 cut(s)	262, 307, 429
AlwI	GGATC	1 cut(s)	424
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	5 cut(s)	298, 363, 456, 507, 520
ApaI	GGGCCC	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	279, 382
ApoI	RAATTY	3 cut(s)	184, 449, 467
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	507, 508
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	291, 394
BccI	CCATC	5 cut(s)	241, 312, 349, 351, 498
BciT130I	CCWGG	3 cut(s)	54, 113, 318
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	3 cut(s)	262, 307, 429
BfaI	CTAG	1 cut(s)	473
BisI	GCNGC	4 cut(s)	280, 283, 383, 477
BlsI	GCNGC	4 cut(s)	281, 284, 384, 478
Bme1390I	CCNGG	3 cut(s)	54, 113, 318
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	507, 508
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	3 cut(s)	54, 113, 318
BmsI	GCATC	2 cut(s)	51, 378
BpuEI	CTTGAG	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	5 cut(s)	53, 73, 112, 477, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	54, 113, 318
BseDI	CCNNGG	5 cut(s)	53, 73, 112, 477, 517
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	140, 440, 538
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	291, 394
Bsh1236I	CGCG	1 cut(s)	479
Bsh1285I	CGRYCG	1 cut(s)	447
BshFI	GGCC	5 cut(s)	300, 365, 458, 509, 522
BsiEI	CGRYCG	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	3 cut(s)	262, 307, 429
BsmI	GAATGC	2 cut(s)	24, 117
BsnI	GGCC	5 cut(s)	300, 365, 458, 509, 522
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	510
Bsp120I	GGGCCC	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	165, 418, 429, 444
BspACI	CCGC	4 cut(s)	283, 321, 477, 479
BspANI	GGCC	5 cut(s)	300, 365, 458, 509, 522
BspCNI	CTCAG	3 cut(s)	141, 439, 537
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	5 cut(s)	53, 73, 112, 477, 517
BssMI	GATC	4 cut(s)	165, 418, 429, 444
BssT1I	CCWWGG	2 cut(s)	73, 517
Bst2UI	CCWGG	3 cut(s)	54, 113, 318
Bst4CI	ACNGT	2 cut(s)	290, 500
BstC8I	GCNNGC	4 cut(s)	363, 367, 401, 407
BstDEI	CTNAG	3 cut(s)	149, 426, 524
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	4 cut(s)	168, 421, 432, 447
BstMAI	GTCTC	3 cut(s)	262, 307, 429
BstMBI	GATC	4 cut(s)	165, 418, 429, 444
BstMCI	CGRYCG	1 cut(s)	447
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 388
BstNI	CCWGG	3 cut(s)	54, 113, 318
BstSCI	CCNGG	3 cut(s)	52, 111, 316
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	291, 394
BstX2I	RGATCY	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	5 cut(s)	300, 365, 458, 509, 522
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	4 cut(s)	363, 367, 401, 407
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	507, 508
Cfr42I	CCGCGG	1 cut(s)	480
CviAII	CATG	2 cut(s)	46, 67
DdeI	CTNAG	3 cut(s)	149, 426, 524
DpnI	GATC	4 cut(s)	167, 420, 431, 446
DpnII	GATC	4 cut(s)	165, 418, 429, 444
EaeI	YGGCCR	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	73, 517
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	52, 111, 316
EcoT14I	CCWWGG	2 cut(s)	73, 517
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	2 cut(s)	73, 517
FaeI	CATG	2 cut(s)	49, 70
FaiI	YATR	4 cut(s)	16, 47, 68, 223
FatI	CATG	2 cut(s)	45, 66
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	280, 283, 383, 477
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	4 cut(s)	280, 283, 383, 477
FspBI	CTAG	1 cut(s)	473
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	4 cut(s)	280, 283, 383, 477
HaeIII	GGCC	5 cut(s)	300, 365, 458, 509, 522
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	49, 70
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	153, 513
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	30, 170, 294, 429, 527
Hpy188III	TCNNGA	3 cut(s)	352, 394, 416
HpyCH4III	ACNGT	2 cut(s)	290, 500
HpyCH4V	TGCA	2 cut(s)	225, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 388
HpyF3I	CTNAG	3 cut(s)	149, 426, 524
Hsp92II	CATG	2 cut(s)	49, 70
HspAI	GCGC	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	165
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	165, 418, 429, 444
Lsp1109I	GCAGC	2 cut(s)	291, 394
LweI	GCATC	2 cut(s)	51, 378
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	4 cut(s)	167, 420, 431, 446
MboI	GATC	4 cut(s)	165, 418, 429, 444
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	5 cut(s)	184, 234, 436, 449, 467
MluNI	TGGCCA	1 cut(s)	458
MlyI	GAGTC	1 cut(s)	522
MnlI	CCTC	5 cut(s)	188, 221, 224, 245, 533
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	1 cut(s)	439
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	479
MspR9I	CCNGG	3 cut(s)	54, 113, 318
Mva1269I	GAATGC	2 cut(s)	24, 117
MvaI	CCWGG	3 cut(s)	54, 113, 318
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	333, 388
NdeII	GATC	4 cut(s)	165, 418, 429, 444
NlaIII	CATG	2 cut(s)	49, 70
NlaIV	GGNNCC	1 cut(s)	509
NsbI	TGCGCA	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	522
PctI	GAATGC	2 cut(s)	24, 117
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	281, 284, 384, 478
Ple19I	CGATCG	1 cut(s)	447
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp6I	CCWGG	3 cut(s)	52, 111, 316
PspGI	CCWGG	3 cut(s)	52, 111, 316
PspN4I	GGNNCC	1 cut(s)	509
PspOMI	GGGCCC	1 cut(s)	507
PspPI	GGNCC	2 cut(s)	507, 508
PsuI	RGATCY	1 cut(s)	429
PvuI	CGATCG	1 cut(s)	447
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	4 cut(s)	280, 283, 383, 477
Sau3AI	GATC	4 cut(s)	165, 418, 429, 444
Sau96I	GGNCC	2 cut(s)	507, 508
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	3 cut(s)	54, 113, 318
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	7 cut(s)	38, 150, 319, 387, 393, 401, 492
SfaNI	GCATC	2 cut(s)	51, 378
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	5 cut(s)	184, 234, 436, 449, 467
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	4 cut(s)	283, 321, 477, 479
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	52, 111, 316
StyI	CCWWGG	2 cut(s)	73, 517
TaaI	ACNGT	2 cut(s)	290, 500
TaqI	TCGA	1 cut(s)	447
TasI	AATT	5 cut(s)	184, 234, 436, 449, 467
TauI	GCSGC	2 cut(s)	285, 479
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseI	GCWGC	2 cut(s)	279, 382
TspGWI	ACGGA	1 cut(s)	389
XapI	RAATTY	3 cut(s)	184, 449, 467
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.