Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007473

Physical Location & Seq

Genomic Coordinates Forward (+)

2964972 .. 2965935

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACTCCAAGACCAACATTTGTTTCTTGAAGGTTCTTAAGGAGCGAGGGGTTGACGATGTTGTGATCAACAATGCTGACATAGTTCAGCATTCTGACAAGGTTGAGCATCATGTTGCCAGGGCTGAAAATCATGTTCCAAGGGCTGAACATCTCTCTCCAAAGCCTGATAGAGTTCCTGGGCATGTCAATCCTACTCGCCACCCTGATAAAGCTGAGAATCATCCTTTTGATCAGAGAACTGGAAAGAAATTTGATAGGAGGGATAATCAAGTTGAGAGAGTAGATATGCAGAAGAGGAATTGGCGTAATGATGGGAGGAAGAACAACAGAGAGACTGATAGGCAGCCGCAACAGTCAGAGAGGCCACCATCACCAGAGACCTGGCGGAAGCCTGAACAGCCAAAACCATCATCTCCTGATGGTGCTGGCCTGCATCACGGAAAAGCAGCTTCAGCTCTTGAGCTTGCGCAAGCATTTTCCAGATCAGTCTCAGATCCAAAATTAAACGATCGAATTTCTGGCCAAAGGGGAATTCCTAGCCGCGGTCAAATACCTTTTTCACGGTTGATGGGCCCAAGTCCAAGGCCTCAGATAAATGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-4B

Protein Analysis

202

Amino Acids

22.97

Weight (kDa)

10.04

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11480 AT1G11480
fragaria_vesca	FvH4_3g03030 FvH4_3g03030 FvH4_3g03030
malus_domestica	MD05G1335400.v1.1 MD10G1310800.v1.1
prunus_persica	Prupe.4G030000_v2.0.a1 Prupe.4G030000_v2.0.a1 Prupe.4G030000_v2.0.a1
pyrus_communis	pycom05g30680 pycom10g26180
rosa_chinensis	RchiOBHm_Chr5g0004671 RchiOBHm_Chr5g0004681
rosa_laevigata	RLG00000031251
rosa_multiflora	Rmu_co8318215.1_g000001 Rmu_sc0002210.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070880
rosa_rugosa	Rorug04G0413200
rosa_samantha	Rh5AG040800 Rh5BG040500 Rh5BG040700 Rh5CG044300 Rh5DG040500
rosa_wichuraiana	Rw5G003930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	471
AccII	CGCG	1 cut(s)	546
AciI	CCGC	4 cut(s)	350, 388, 544, 546
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	3 cut(s)	251, 516, 534
AcuI	CTGAAG	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	3 cut(s)	119, 178, 383
AjuI	GAANNNNNNNTTGG	4 cut(s)	8, 40, 519, 551
AluBI	AGCT	4 cut(s)	215, 452, 458, 466
AluI	AGCT	4 cut(s)	215, 452, 458, 466
Alw26I	GTCTC	3 cut(s)	329, 374, 496
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	5 cut(s)	365, 430, 523, 574, 587
ApaI	GGGCCC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	346, 449
ApoI	RAATTY	3 cut(s)	251, 516, 534
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	574, 575
AsuHPI	GGTGA	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	358, 461
BccI	CCATC	5 cut(s)	308, 379, 416, 418, 565
BciT130I	CCWGG	3 cut(s)	121, 180, 385
BclI	TGATCA	2 cut(s)	66, 232
BcoDI	GTCTC	3 cut(s)	329, 374, 496
BfaI	CTAG	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	4 cut(s)	347, 350, 450, 544
BlsI	GCNGC	4 cut(s)	348, 351, 451, 545
Bme1390I	CCNGG	3 cut(s)	121, 180, 385
BmgT120I	GGNCC	2 cut(s)	574, 575
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	3 cut(s)	121, 180, 385
BmsI	GCATC	2 cut(s)	118, 445
BpuEI	CTTGAG	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	5 cut(s)	120, 140, 179, 544, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	121, 180, 385
BseDI	CCNNGG	5 cut(s)	120, 140, 179, 544, 584
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	3 cut(s)	207, 507, 605
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	358, 461
Bsh1236I	CGCG	1 cut(s)	546
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	5 cut(s)	367, 432, 525, 576, 589
BsiEI	CGRYCG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	3 cut(s)	329, 374, 496
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	5 cut(s)	367, 432, 525, 576, 589
Bso31I	GGTCTC	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	5 cut(s)	66, 232, 485, 496, 511
BspACI	CCGC	4 cut(s)	350, 388, 544, 546
BspANI	GGCC	5 cut(s)	367, 432, 525, 576, 589
BspCNI	CTCAG	3 cut(s)	208, 506, 604
BspFNI	CGCG	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	5 cut(s)	120, 140, 179, 544, 584
BssMI	GATC	5 cut(s)	66, 232, 485, 496, 511
BssT1I	CCWWGG	2 cut(s)	140, 584
Bst2UI	CCWGG	3 cut(s)	121, 180, 385
Bst4CI	ACNGT	2 cut(s)	357, 567
Bst6I	CTCTTC	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	38
BstC8I	GCNNGC	4 cut(s)	430, 434, 468, 474
BstDEI	CTNAG	3 cut(s)	216, 493, 591
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	5 cut(s)	69, 235, 488, 499, 514
BstMAI	GTCTC	3 cut(s)	329, 374, 496
BstMBI	GATC	5 cut(s)	66, 232, 485, 496, 511
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 455
BstNI	CCWGG	3 cut(s)	121, 180, 385
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	119, 178, 383
BstSLI	GKGCMC	1 cut(s)	578
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	358, 461
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	5 cut(s)	367, 432, 525, 576, 589
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	4 cut(s)	430, 434, 468, 474
CfoI	GCGC	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	574, 575
Cfr42I	CCGCGG	1 cut(s)	547
CviAII	CATG	3 cut(s)	113, 134, 185
DdeI	CTNAG	3 cut(s)	216, 493, 591
DpnI	GATC	5 cut(s)	68, 234, 487, 498, 513
DpnII	GATC	5 cut(s)	66, 232, 485, 496, 511
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	140, 584
Eco147I	AGGCCT	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	3 cut(s)	119, 178, 383
EcoT14I	CCWWGG	2 cut(s)	140, 584
EcoT38I	GRGCYC	1 cut(s)	578
ErhI	CCWWGG	2 cut(s)	140, 584
FaeI	CATG	3 cut(s)	116, 137, 188
FaiI	YATR	5 cut(s)	83, 114, 135, 186, 290
FatI	CATG	3 cut(s)	112, 133, 184
FbaI	TGATCA	2 cut(s)	66, 232
Fnu4HI	GCNGC	4 cut(s)	347, 350, 450, 544
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	347, 350, 450, 544
FspBI	CTAG	1 cut(s)	540
FspI	TGCGCA	1 cut(s)	471
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	4 cut(s)	347, 350, 450, 544
HaeIII	GGCC	5 cut(s)	367, 432, 525, 576, 589
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	116, 137, 188
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	97, 237, 361, 496, 594
Hpy188III	TCNNGA	4 cut(s)	28, 419, 461, 483
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	357, 567
HpyCH4V	TGCA	2 cut(s)	292, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 455
HpyF3I	CTNAG	3 cut(s)	216, 493, 591
Hsp92II	CATG	3 cut(s)	116, 137, 188
HspAI	GCGC	1 cut(s)	470
Ksp22I	TGATCA	2 cut(s)	66, 232
KspI	CCGCGG	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	66, 232, 485, 496, 511
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	2 cut(s)	358, 461
LweI	GCATC	2 cut(s)	118, 445
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	5 cut(s)	68, 234, 487, 498, 513
MboI	GATC	5 cut(s)	66, 232, 485, 496, 511
MboII	GAAGA	2 cut(s)	307, 334
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	578
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	5 cut(s)	251, 301, 503, 516, 534
MluNI	TGGCCA	1 cut(s)	525
MnlI	CCTC	6 cut(s)	41, 255, 291, 312, 357, 600
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	39, 506
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	546
MspCI	CTTAAG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	121, 180, 385
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	3 cut(s)	121, 180, 385
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	2 cut(s)	400, 455
NdeII	GATC	5 cut(s)	66, 232, 485, 496, 511
NlaIII	CATG	3 cut(s)	116, 137, 188
NlaIV	GGNNCC	1 cut(s)	576
NsbI	TGCGCA	1 cut(s)	471
NspI	RCATGY	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	589
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	348, 351, 451, 545
Ple19I	CGATCG	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	119, 178, 383
PspGI	CCWGG	3 cut(s)	119, 178, 383
PspN4I	GGNNCC	1 cut(s)	576
PspOMI	GGGCCC	1 cut(s)	574
PspPI	GGNCC	2 cut(s)	574, 575
PsuI	RGATCY	1 cut(s)	496
PvuI	CGATCG	1 cut(s)	514
SacII	CCGCGG	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	39, 506
SatI	GCNGC	4 cut(s)	347, 350, 450, 544
Sau3AI	GATC	5 cut(s)	66, 232, 485, 496, 511
Sau96I	GGNCC	2 cut(s)	574, 575
ScrFI	CCNGG	3 cut(s)	121, 180, 385
SduI	GDGCHC	1 cut(s)	578
SetI	ASST	8 cut(s)	36, 105, 217, 386, 454, 460, 468, 559
SfaNI	GCATC	2 cut(s)	118, 445
Sfr303I	CCGCGG	1 cut(s)	547
SgrBI	CCGCGG	1 cut(s)	547
SmlI	CTYRAG	2 cut(s)	38, 461
SmoI	CTYRAG	2 cut(s)	38, 461
Sse9I	AATT	5 cut(s)	251, 301, 503, 516, 534
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	4 cut(s)	350, 388, 544, 546
SspMI	CTAG	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	3 cut(s)	119, 178, 383
StyI	CCWWGG	2 cut(s)	140, 584
TaaI	ACNGT	2 cut(s)	357, 567
TaqI	TCGA	1 cut(s)	514
TasI	AATT	5 cut(s)	251, 301, 503, 516, 534
TauI	GCSGC	2 cut(s)	352, 546
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	39, 506
Tru9I	TTAA	2 cut(s)	39, 506
TseI	GCWGC	2 cut(s)	346, 449
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	456
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	3 cut(s)	251, 516, 534
XceI	RCATGY	1 cut(s)	188
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.