Rmu_co8345397.1_g000001

ammonium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8345397.1
OG0015516
Physical Location & Seq
Forward (+)
216 .. 668
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8345397.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atgatggtattgcataaaagatcacctatcttccaaagtgtagatgacacactaggagtcttccacacccacgccgtggccggtgtcttggggggacttctctcgggcttctttgcaaaatcgaaccttctgagaatgatgtacagaaatgaccattatggtcccggattattgtactgcatttttgaggggaatccacgtaaaggtcttaaacaaatggggtaccagatcctcggagctcttttcattatcgtatggaatgttgttgcgacgagcttgatttgtattttcatcagcaaaatcgttgatctgaggatgaaggaagaagatcttgacattggtgatgatgcggtgcacggagaagaagcctatgctatttggggtgatggtgagaggacgtcagcatacaggaggcatataaggattccttccatctgtagacggcagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

150

Amino Acids

16.97

Weight (kDa)

8.83

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015516)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10970
malus_domestica MD02G1122700.v1.1
prunus_persica Prupe.7G175800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0098231
rosa_laevigata RLG00000016777
rosa_multiflora Rmu_co8345397.1_g000001 Rmu_sc0009178.1_g000002 Rmu_sc0009922.1_g000007
rosa_roxburghii Rroxscaffold_2G00144140
rosa_rugosa Rorug02G0071300 Rorug02G0071400
rosa_samantha Rh2AG118400 Rh2BG121500 Rh2CG123100 Rh2DG123200
rosa_wichuraiana Rw2G009290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 401
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 76
AccI GTMKAC 1 cut(s) 439
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 398
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 3 cut(s) 143, 176, 224
AfiI CCNNNNNNNGG 2 cut(s) 76, 203
AluBI AGCT 2 cut(s) 239, 276
AluI AGCT 2 cut(s) 239, 276
Alw21I GWGCWC 2 cut(s) 241, 357
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 103
AoxI GGCC 1 cut(s) 78
ApaLI GTGCAC 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 4 cut(s) 15, 353, 395, 401
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 241, 357
BccI CCATC 2 cut(s) 380, 440
BceAI ACGGC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 436
BglII AGATCT 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 163, 224
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 75, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 203
Bse118I RCCGGY 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 75, 232
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 76, 203
BseMII CTCAG 2 cut(s) 122, 302
BseSI GKGCMC 1 cut(s) 357
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 241, 357
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 81, 165
BslFI GGGAC 2 cut(s) 108, 147
BslI CCNNNNNNNGG 2 cut(s) 76, 203
BsmFI GGGAC 2 cut(s) 108, 147
BsnI GGCC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 241, 357
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 20, 228, 307, 328
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 123, 303
BspLI GGNNCC 2 cut(s) 163, 224
BspPI GGATC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 75, 232
BssMI GATC 4 cut(s) 20, 228, 307, 328
BssNI GRCGYC 1 cut(s) 398
BstACI GRCGYC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 131, 311
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 4 cut(s) 23, 231, 310, 331
BstMBI GATC 4 cut(s) 20, 228, 307, 328
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 228, 328
BstYI RGATCY 2 cut(s) 228, 328
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 142, 175, 223
CviJI RGCY 5 cut(s) 80, 108, 239, 276, 368
CviKI_1 RGCY 5 cut(s) 80, 108, 239, 276, 368
CviQI GTAC 3 cut(s) 142, 175, 223
DdeI CTNAG 2 cut(s) 131, 311
DpnI GATC 4 cut(s) 22, 230, 309, 330
DpnII GATC 4 cut(s) 20, 228, 307, 328
DraIII CACNNNGTG 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 241
FaiI YATR 7 cut(s) 15, 159, 256, 372, 406, 417, 419
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 412, 444
FaqI GGGAC 2 cut(s) 108, 147
FblI GTMKAC 1 cut(s) 439
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 81, 165
Hin1I GRCGYC 1 cut(s) 398
HinfI GANTC 3 cut(s) 57, 193, 424
HpaII CCGG 2 cut(s) 81, 165
HphI GGTGA 4 cut(s) 15, 353, 395, 401
Hpy166II GTNNAC 2 cut(s) 355, 440
Hpy188I TCNGA 3 cut(s) 132, 236, 312
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 355, 440
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 3 cut(s) 137, 313, 438
HpyCH4IV ACGT 2 cut(s) 199, 398
HpyCH4V TGCA 4 cut(s) 13, 116, 180, 355
HpyF3I CTNAG 2 cut(s) 131, 311
HpySE526I ACGT 2 cut(s) 199, 398
Hsp92I GRCGYC 1 cut(s) 398
KpnI GGTACC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 20, 228, 307, 328
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 4 cut(s) 94, 178, 239, 394
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 199, 398
MalI GATC 4 cut(s) 22, 230, 309, 330
MboI GATC 4 cut(s) 20, 228, 307, 328
MboII GAAGA 5 cut(s) 22, 52, 335, 338, 374
MflI RGATCY 2 cut(s) 228, 328
MhlI GDGCHC 2 cut(s) 241, 357
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 5 cut(s) 181, 242, 306, 387, 405
MseI TTAA 1 cut(s) 210
MspI CCGG 2 cut(s) 81, 165
MspR9I CCNGG 1 cut(s) 165
NciI CCSGG 1 cut(s) 165
NdeII GATC 4 cut(s) 20, 228, 307, 328
NlaIV GGNNCC 2 cut(s) 163, 224
PfeI GAWTC 2 cut(s) 193, 424
PflMI CCANNNNNTGG 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 163
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 163, 224
PspPI GGNCC 1 cut(s) 161
PsuI RGATCY 2 cut(s) 228, 328
RsaI GTAC 3 cut(s) 143, 176, 224
RsaNI GTAC 3 cut(s) 142, 175, 223
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 4 cut(s) 20, 228, 307, 328
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 2 cut(s) 241, 357
SetI ASST 7 cut(s) 28, 129, 202, 208, 241, 278, 401
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 436
SinI GGWCC 1 cut(s) 161
SsiI CCGC 1 cut(s) 350
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 163
TaiI ACGT 2 cut(s) 202, 401
TaqI TCGA 1 cut(s) 122
TatI WGTACW 2 cut(s) 141, 174
TfiI GAWTC 2 cut(s) 193, 424
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 3 cut(s) 235, 280, 332
TspGWI ACGGA 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 439
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.