Rorug02G0071300

ammonium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015516
Physical Location & Seq
Forward (+)
5563473 .. 5563990
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0071300.1

Sequence Viewer

Length: 423 bp
ATGCATAGGCCTCTGATTGGAAAGCTGCAACTATTATTTCTCAAGTCCGGTACCTCTCTTCAACCCGGCAGTTTAACTGGTCTTGGATCAGTTGAAAGGCTGATAAAGCAGCCCATCTTGTTGCTTCTTGGCCTGCAAACTGTCTCTTTTGCTGCTGTGATTGCGCGGGCGTGCCAGCACCGTGGGGTGCAGTCGTCGGGGGAGTCCCTTGACCTGACTTCTTCTTCAGGCGTTGTGGACGAGGAGAGCACCAACCTCGCCACAAAGTTCTTTTCTATGCCTTCCGAGAAAGGACTTCTTGCCTTACGGATAAGGACTTTGGGTGTGATCTCTTCGCGTCACCGAATCGATACTCAACGTTGTAGGTTGAGCAGAGCAATCACTGGGAAGTTTGGAGAAAGCACGGGTTTTGCTAAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

140

Amino Acids

15.02

Weight (kDa)

10.61

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015516)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10970
malus_domestica MD02G1122700.v1.1
prunus_persica Prupe.7G175800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0098231
rosa_laevigata RLG00000016777
rosa_multiflora Rmu_co8345397.1_g000001 Rmu_sc0009178.1_g000002 Rmu_sc0009922.1_g000007
rosa_roxburghii Rroxscaffold_2G00144140
rosa_rugosa Rorug02G0071300 Rorug02G0071400
rosa_samantha Rh2AG118400 Rh2BG121500 Rh2CG123100 Rh2DG123200
rosa_wichuraiana Rw2G009290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 2 cut(s) 166, 337
AciI CCGC 1 cut(s) 166
AclI AACGTT 1 cut(s) 358
AclWI GGATC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 62, 95
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 8, 130
ApeKI GCWGC 3 cut(s) 25, 109, 152
Asp718I GGTACC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 332
BanI GGYRCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 12, 121, 139
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 148
BisI GCNGC 3 cut(s) 26, 110, 153
BlsI GCNGC 3 cut(s) 27, 111, 154
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 82, 388
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 17
BseNI ACTGG 2 cut(s) 82, 388
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 12, 121, 139
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 2 cut(s) 166, 337
BshFI GGCC 2 cut(s) 10, 132
BshNI GGYRCC 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 48, 66
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 2 cut(s) 10, 132
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 86, 327
BspACI CCGC 1 cut(s) 166
BspANI GGCC 2 cut(s) 10, 132
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 2 cut(s) 166, 337
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 82, 388
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 86, 327
Bst4CI ACNGT 2 cut(s) 142, 182
Bst6I CTCTTC 2 cut(s) 63, 337
BstC8I GCNNGC 4 cut(s) 134, 168, 172, 176
BstDSI CCRYGG 1 cut(s) 181
BstFNI CGCG 2 cut(s) 166, 337
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 89, 330
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 86, 327
BstMWI GCNNNNNNNGC 2 cut(s) 106, 161
BstSCI CCNGG 1 cut(s) 64
BstUI CGCG 2 cut(s) 166, 337
BstV1I GCAGC 3 cut(s) 12, 121, 139
BstXI CCANNNNNNTGG 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 2 cut(s) 10, 132
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 4 cut(s) 134, 168, 172, 176
CfoI GCGC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 5 cut(s) 10, 25, 100, 112, 132
CviKI_1 RGCY 5 cut(s) 10, 25, 100, 112, 132
CviQI GTAC 1 cut(s) 51
DpnI GATC 2 cut(s) 88, 329
DpnII GATC 2 cut(s) 86, 327
Eam1104I CTCTTC 2 cut(s) 63, 337
EarI CTCTTC 2 cut(s) 63, 337
Eco147I AGGCCT 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 2 cut(s) 6, 278
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 190
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 26, 110, 153
Fsp4HI GCNGC 3 cut(s) 26, 110, 153
GlaI GCGC 1 cut(s) 165
GluI GCNGC 3 cut(s) 26, 110, 153
HaeIII GGCC 2 cut(s) 10, 132
HapII CCGG 2 cut(s) 48, 66
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 166
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 2 cut(s) 203, 345
HpaII CCGG 2 cut(s) 48, 66
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 15, 286
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 142, 182
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 4 cut(s) 4, 28, 136, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 161
HpySE526I ACGT 1 cut(s) 358
HspAI GCGC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 86, 327
LpnPI CCDG 8 cut(s) 61, 63, 79, 146, 188, 213, 227, 369
Lsp1109I GCAGC 3 cut(s) 12, 121, 139
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 338
MalI GATC 2 cut(s) 88, 329
MboI GATC 2 cut(s) 86, 327
MboII GAAGA 4 cut(s) 50, 213, 216, 324
MhlI GDGCHC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 4 cut(s) 21, 64, 235, 266
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 74
MspI CCGG 2 cut(s) 48, 66
MspR9I CCNGG 1 cut(s) 66
MvnI CGCG 2 cut(s) 166, 337
MwoI GCNNNNNNNGC 2 cut(s) 106, 161
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 86, 327
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 3 cut(s) 27, 111, 154
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp1406I AACGTT 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 52
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 3 cut(s) 26, 110, 153
Sau3AI GATC 2 cut(s) 86, 327
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 27, 56, 216, 258, 361, 368
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 166
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 142, 182
TaiI ACGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 348
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 3 cut(s) 25, 109, 152
Tsp45I GTSAC 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.